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abctools (version 1.0.3)

Tools for ABC Analyses

Description

Tools for approximate Bayesian computation including summary statistic selection and assessing coverage.

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Install

install.packages('abctools')

Monthly Downloads

296

Version

1.0.3

License

GPL (>= 2)

Issues

0

Pull Requests

0

Stars

6

Forks

3

Maintainer

Matt Nunes

Last Published

July 15th, 2015

Functions in abctools (1.0.3)

selectsumm

Generic function for selecting summary statistics in ABC inference.
mc.ci

Diagnostic plots for model choice coverage output
nn.ent

Works out entropy of a sample.
rsse

Simulation error measures.
coal

Examples of coalescent data
combmat

table of combinations
saABC

Summary statistic construction by semi-automatic ABC
stage2

stage2
AS.select

Summary statistics selection using approximate sufficiency.
AS.test

Test for relative approximate sufficiency between two posterior samples.
mincrit

Summary statistics selection by minimizing a posterior sample measure.
abctools-package

Tools for ABC analyses
cov.pi

Coverage property diagnostics
semiauto.abc

Performs semi-automatic ABC based on summary statistics regression.