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abd (version 0.2-6)

The Analysis of Biological Data

Description

The abd package contains data sets and sample code for The Analysis of Biological Data by Michael Whitlock and Dolph Schluter (2009; Roberts & Company Publishers). Some examples utilize the manipulate package, which is available within RStudio (http://www.rstudio.com).

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Version

Install

install.packages('abd')

Monthly Downloads

491

Version

0.2-6

License

GPL-2

Maintainer

Kevin M Middleton

Last Published

March 31st, 2014

Functions in abd (0.2-6)

Dolphins

Dolphin Swimming Behavior
Aspirin

Effects of Aspirin on Cancer Rates
BeeGenes

Foraging Gene Expression
BodyFatHeatLoss

Heat Loss and Body Fat
FlyTestes

Testes Size in Flies
Earwigs

Earwig Density and Forceps
AlgaeCO2

Carbon Dioxide and Growth Rate in Algae
BeeLifespans

Bee Lifespans
GodwitArrival

Godwit Arrival Dates
MoleRats

Energy Expenditure in Mole Rats
LionCubs

Time to Reproduction in Female Lions
Grassland

Grassland Diversity
EndangeredSpecies

Endangered and Threatened Species
SagebrushCrickets

Sagebrush Cricket Mating Times
FlycatcherPatch

Forehead Patch Size in Collared Flycatachers
Fireflies

Spermatophore Mass in Fireflies
Beetles

Beetle Wings and Horns
HumanGeneLengths

Human Gene Lengths
Antilles

Antilles Bird Immigration Dates
CocaineDopamine

Effects of Cocaine on Dopamine Receptors
Cichlids

Cichlid Mating Preference
Blackbirds

Testosterone Levels in Blackbirds
ChimpBrains

Brodmann's Area 44 in Chimps
LizardBite

Bite Force in Collard Lizards
Dioecy

Dioecy vs. Monomorphism in Plants
ElVerde

Diet Breadth in a Rainforest Community
IntertidalAlgae

Intertidal Algae
Pollen

Sterility in Hybrid Pollens
SexualSelection

Sexual Conflict
HumanBodyTemp

Human Body Temperature
ConvictionsAndIncome

Convictions and Income Level in a Cohort of English Boys
FireflyFlash

Firefly Flash Duration
PrimateMetabolism

Primate Metabolic Rates
Earthworms

Earthworm Diversity and Soil Nitrogen Levels
Convictions

Frequency of Convictions for a Cohort of English Boys
MarineReserve

Marine Reserve Biomass
Mosquitoes

Body Size in Anopheles Mosquitoes
DaphniaLongevity

Daphnia Longevity
BirdSexRatio

Sex Ratios in Birds
SyrupSwimming

Syrup Swimming
MouseEmpathy

Mouse Empathy
DaphniaResistance

Daphnia Resistance to Cyanobacteria
FingerRatio

2D:4D Finger Ratio
LionNoses

Lion Age and Nose Coloration
Crickets

Immunity and Sperm Viability in Crickets
DayOfBirth

Day of Birth
Greenspace

Diversity in Urban Green Space
LanguageBrains

Brain Structure in Bilingual Humans
ToothAge

Radioactive Teeth
SalmonColor

Pacific Salmon Color
Seedlings

Number of Seedlings Per Quadrat
DEET

DEET and Mosquito Bites
ElectricFish

Electric Fish
DesertBirds

Desert Bird Census Data
BrainExpression

Proteolipid Protein 1 Gene Expression
Hurricanes

Intense Hurricanes
SockeyeFemales

Body Masses of Female Sockeye Salmon
HippocampusLesions

Memory and the Hippocampus
DungBeetles

Heritability of Body Condition in Dung Beetles
Clearcuts

Biomass Change in Rainforests near Clearcuts
ShadParasites

Shad Parasites
VoleDispersal

Home Range Size in Field Voles
LiverPreparation

Liver Preparation
Hemoglobin

Hemoglobin Levels in High Altitude Populations
MassExtinctions

Mass Extinction Frequency
Pufferfish

Pufferfish Mimicry
NeotropicalTrees

Photosynthesis in Neotropical Trees
KenyaFinches

Body Mass and Beak Length in Three Species of Finches in Kenya
PrimateWBC

Primate White Blood Cell Counts and Promiscuity
NeanderthalBrains

Cranial Capacity in Neanderthals and Modern Humans
Tobacco

Flower Length in Tobacco Plants
GreatTitMalaria

Malaria in Populations of Great Tit
Rattlesnakes

Temperature Change and Meal Size in Rattlesnakes
WalkingStickHeads

Walking Stick Head Width
Lynx

Population Cycles of Lynx in Canada 1752-1819
YeastGenes

Yeast Regulatory Genes
Powerball

Powerball Tickets Sold
Sparrows

Lifetime Reproductive Success in House Sparrows
LupusMice

Autoimmune Reactivity in Lupus-prone Mice
GeneRegulation

Gene Regulation in Saccharomyces
CichlidsGnRH

GnRH Levels in Cichlids
LarvalFish

Exploited Larval Fish
RopeTrick

Indian Rope Trick
Pseudoscorpions

Multiple Mating in Pseudoscorpions
SleepAndPerformance

Sleep and Learning
ShuttleDisaster

Ambient Temperature and O-Ring Failures
Cavalry

Deaths from Horse Kicks
TimeOfDeath

Hypoxanthine and Time Since Death
HornedLizards

Horn Length and Predation Status of Horned Lizards
Trematodes

Frequencies of Fish Eaten by Trematode Infection Level
Telomeres

Telomere Shortening
Selection

Data for Meta-analysis
SticklebackPreference

Mating Preferences in Sticklebacks
LizardSprint

Sprint Speeds in Canyon Lizards
PlantPersistence

Population Persistence Times
WalkingStickFemurs

Walking Stick Femur Length
NorthSeaCod

Atlantic Cod Recruits
ShrinkingSeals

Seal Body Lengths and Age
NoSmokingDay

No Smoking Day
Iguanas

Iguana Body Length Changes
Lefthanded

Left-handedness and Rates of Violence
Stalkies1

Eye Widths in Stalk-Eyed Flies
histochart

Histogram from tabulated data
Lobsters

Lobster Orientation
Newts

Tetrodotoxin Resistance in Garter Snakes
VampireBites

Vampire Bat Bites
Penguins

Penguin Heart Rate
VasopressinVoles

Vasopressin Manipulation in the Meadow Vole
WolfTeeth

Wolf Tooth Measurements
OstrichTemp

Ostrich Body and Brain Temperatures
ProgesteroneExercise

Progesterone and Exercise
abd-package

Data sets from The Analysis of Biological Data
TwoKids

Number of Boys in Two-Child Families
WeddellSeals

Energetic Cost of Diving
Rigormortis

Rigormortis and Time of Death
ZebraFinches

Zebra Finch Carotenoids
WillsPresidents

Presidential "Wills"
Toads

Right-handed Toads
Truffles

Truffle Distribution
Sumo

Sumo Wrestling Wins
SpiderColonies

Social Spiders
Trillium

Trillium Recruitment near Clearcuts
WrasseSexes

Distribution of Wrasses
SpiderSpeed

Spider Running Speeds after Amputation
TreeSeedlings

Tree Seedlings and Sunflecks
TeenDeaths

Causes of Teenage Deaths
NematodeLifespan

Effects of Trimethadione on Lifespan in Nematodes
SticklebackPlates

Number of Lateral Plates in Sticklebacks
Vines

Climbing Vines
Stalkies2

Stalk-eyed Fly Eyespan
Wolves

Inbreeding in Wolves
TsetseLearning

Dietary Learning in Tsetse Flies
abdData

Find data in Analysis of Biological Data
Zooplankton

Zooplankton Depredation
ZebraFinchBeaks

Mate Preference in Zebra Finches
col.abd

Lattice theme for Analysis of Biological Data
dataInfo

abd Data Sets
ZooMortality

Home Range Size and Mortality
BrookTrout

Salmon Survival in the Presence of Brook Trout
Chickadees

Alarm Calls in Chickadees
Eelgrass

Eelgrass Genotypes
Guppies

Ornamentation and Attractiveness in Guppies
JetLagKnees

Circadian Rhythm Phase Shift
Silversword

Rate of Speciation in Silverswords
Tobacco2

Flower Length in Tobacco Plants
GlidingSnakes

GlidingSnakes
LodgepolePines

Lodgepole Pine Cone Masses
WillsDebates

Presidential "Wills"
WorldCup

World Cup Goals