acm4r (version 1.0)

call_gd1: Genetic Distance 1

Description

Genetic Distance 1 which includes a lambda parameter

Usage

call_gd1(intable, gcrit = 5, lambda = 0.05)

Arguments

intable
is the name of the acm table.
gcrit
is the threshold of genetic distance such that two lanes are matching if and only if the genetic distance between them is less than gcrit. Is used to get a list of ids for subjects who have gd distance less than gcrit
lambda
is the minimum number of bands that need to match

Value

A matrix with two colums of fingerprint IDs. Each line represents a match according to gcrit.

References

Salamon et. al (1998) Accommodating Error Analysis in Comparison and Clustering of Molecular Fingerprints. Emerging Infectious Diseases Vol. 4, No. 2, April-June 1998

Abasci LLC. JAMES v1.0 User Documentation. 2002.

Examples

Run this code

#matching by GD1
res_gd1<-call_gd1(res1)

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