Genetic Distance 2 which includes a lambda parameter
Usage
call_gd2(intable, gcrit = 2)
Arguments
intable
is the name of the acm table
gcrit
is the threshold of genetic distance such
that two lanes are matching if and only if the genetic
distance between them is less than gcrit. Is used to get
a list of ids for subjects who have gd distance less than
gcrit
Value
A matrix with two colums of fingerprint IDs. Each line
represents a match according to gcrit.
References
Salamon et. al (1998) Accommodating Error Analysis in
Comparison and Clustering of Molecular Fingerprints.
Emerging Infectious Diseases Vol. 4, No. 2, April-June 1998