ade4 (version 1.7-15)

njplot: Phylogeny and trait of bacteria

Description

This data set describes the phylogeny of 36 bacteria as reported by Perri<U+00E8>re and Gouy (1996). It also gives the GC rate corresponding to these 36 species.

Usage

data(njplot)

Arguments

Format

njplot is a list containing the 2 following objects:

tre

is a character string giving the fission tree in Newick format.

tauxcg

is a numeric vector that gives the CG rate of the 36 species.

References

Perri<U+00E8>re, G. and Gouy, M. (1996) WWW-Query : an on-line retrieval system for biological sequence banks. Biochimie, 78, 364--369.

Examples

Run this code
# NOT RUN {
data(njplot)
njplot.phy <- newick2phylog(njplot$tre)
par(mfrow = c(2,1))
tauxcg0 <- njplot$tauxcg - mean(njplot$tauxcg)
symbols.phylog(njplot.phy, squares = tauxcg0)
symbols.phylog(njplot.phy, circles = tauxcg0)
par(mfrow = c(1,1))
# }

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