Deprecated functions in ade4
Spatial pattern analysis in plant communities
Graphical Display of Areas
Internal ade4 functions
Arrivals at an intensive care unit
Add graphics to an existing plot
Taxonomy
Small Ecological Dataset
Genetic variability of Cacadors
The ade4 package
Utility function to test if the package adegraphics is loaded
Codon usage
Bird species distribution
Analysis of molecular variance
Tests of randomization on the correlation between two distance matrices (in R).
Fauna Table for Constrained Ordinations
Ecological Tables Triplet
Buech basin
Genomes of 43 Bacteria
Monte-Carlo Test on the sum of eigenvalues of a co-inertia analysis (in R).
Wine Tasting
Table of Factors
Import data files from Phylogenetic Independance Package
Ecological and Biological Traits
Phylogeny and quantative trait of carnivora
Road Distances
Genetics-Ecology-Environment Triple
Taxonomy, phylogenies and quantitative traits of carnivora and herbivora
Corvus morphology
STATIS and Co-Inertia : Analysis of a series of paired ecological tables
Phylogeny and quantitative traits of carnivora
Maximal value of Rao's diversity coefficient also called
quadratic entropy
Allelic frequencies in ten honeybees populations at eight microsatellites loci
Rao's diversity coefficient also called quadratic entropy
Charolais-Zebus
Phylogenies and quantitative traits from Abouheif
Duality Diagram
Apportionment of Quadratic Entropy
Enzymatic polymorphism in Leuciscus cephalus
Distribution of Alpine plants in Aravo (Valloire, France)
Pair of Variables
Fauna Table with double (row and column) partitioning
Exam marks for some students
Rao's dissimilarity coefficient
Veterinary epidemiological study to assess the risk factors for losses in broiler chickens
Ordination of Tables mixing quantitative variables and factors
Monte-Carlo test on a Costatis analysis (in C).
African Estuary Fishes
Computation of the Distance Matrix from a Statistical Triplet
Computation of Distance Matrices for Binary Data
Functions to compute the fourth-corner statistic
Multiple Correspondence Analysis
Non symmetric correspondence analysis
Dagnelie multinormality test
Between-Class Analysis
Geary's Irish Data
Faunistic K-tables
Decentred Correspondence Analysis
Triangular Data
K-tables of wine-tasting
Correspondence Analysis
Class of the Permutation Tests (in C).
Is a Distance Matrix Euclidean?
Linear Discriminant Analysis (descriptive statistic)
Microsatellites of Galapagos tortoises populations
Cubic Ecological Data
Multiple Graphs of a STATIS Analysis
Double Weighted Centring
Multiple Graphs for a Partial Triadic Analysis
Multiple Graphs for Separated Analyses in a K-tables
Creation of K-tables from a data frame
Ponds in a nature reserve
the class of objects 'kdist' (K distance matrices)
Mantel test (correlation between two distance matrices (in R).)
the class of objects 'ktab' (K-tables)
Enzymatic polymorphism in Mus musculus
Phylogeny and quantitative traits of flowers
Granulometric Curves
Global State of the World in 1984
Phylogeny and quantitative traits of lizards
Discriminant Correspondence Analysis
Athletes' Morphology
Between-Class Analysis
Multivariate spatial analysis
Originality of a species
Multivariate spatial autocorrelation test (in C)
Plant traits response to grazing
Fuzzy Correspondence Analysis and Fuzzy Principal Components Analysis
Between-Class RLQ analysis
Functions to combine and adjust the outputs 3-table methods
Tests of randomization between distances applied to 'kdist' objetcs
Mixed-variables coefficient of distance
Oribatid mite
Computation of the Distance Matrix associated to a Neighbouring Graph
Pair of Ecological Tables
Double principal coordinate analysis
Landmarks
Between-class coinertia analysis
Multiple CO-inertia Analysis
Dune Meadow Data
Multiblock partial least squares
Principal Component Analysis
Qualitative Weighted Variables
Ordination of Tables mixing quantitative variables and factors
Principal Coordinates Analysis
Bootstrap simulations
Genetic structure of two nitrogen fixing bacteria influenced
by geographical isolation and host specialization
Between- and within-class double principal coordinate analysis
Genetic Variation In Human Populations
Display of a scatterplot and its two marginal histograms
Plot of a frequency distribution
Transformation to make Euclidean a distance matrix
Complete regular grid analysis
Reconstitution of Data from a Duality Diagram
Plot of Paired Coordinates
K-tables Correspondence Analysis with the same rows and the same columns
Fission pattern and heritable morphological traits
K-tables Multi-Regions
Multiple Double Principal Coordinate Analysis
Seed dispersal
Frequenting movie theaters in France in 2003
Transformation of a distance matrice to a Euclidean one
Multiple Graphs for a Multiple Factorial Analysis
Ecological Data : sites-variables, sites-species, where and when
Fruit Production
Electrocardiogram data
Table of Fuzzy Biological Traits
Scatterplot of two sets of coordinates and a partionning into classes
Multiple Graphs for a Multiple Co-inertia Analysis
STATIS and Co-Inertia : Analysis of a series of paired ecological tables
Phyto-Ecological Survey
Coinertia Analysis
Computation of Distance Matrices of Percentage Data
Representation of many quantitative variables in front of a phylogenetic tree
Computation of Distance Matrices on Quantitative Variables
Transformation of K distance matrices (object 'kdist') into K Euclidean representations (object 'ktab')
Point sampling of fish community
Phylogenetic trees in Newick format
Representation of n values on a circle
Decomposition of inertia (i.e. contributions) in multivariate methods
Mantel test (correlation between two distance matrices (in C).)
Ecomorphological Convergence
Process to go from a Within Analysis to a K-tables
Orthonormal basis for orthonormal transform
Graphical representation of the outputs of a multivariate analysis
Plot of the factorial maps in a Multiple Correspondence Analysis
Create phylogeny
Genetic/Environment and types of variables
a way to obtain Euclidean distance matrices
A table of Qualitative Variables
Electoral Data
Plot phylogenies
Pair of Tables
Display and summarize multiblock objects
Graphs to study one factor in a Multiple Correspondence Analysis
Moran's I and Geary'c randomization tests for spatial and phylogenetic autocorrelation
STATIS, a method for analysing K-tables
Multi Level Decomposition of unidimensional data
Faunistic Communities and Sampling Experiment
Minimal Spanning Tree
Projections of Supplementary Rows for a Partial Triadic Analysis of K-tables
Representation of a quantitative variable in front of a phylogenetic tree
Reciprocal scaling after a correspondence analysis
Within-Class Analysis
Principal component analysis with respect to instrumental variables
Monte-Carlo test on a Statico analysis (in C).
Permutation tests on an analysis of molecular variance (in C).
Wine Tasting
Tinto and Odiel estuary geochemistry
Selection of the number of dimension by two-fold cross-validation for multiblock methods
Method to Analyse a pair of tables : Environmental and Faunistic Data
Assemblages of Macroinvertebrates in the Loire River (France)
Non-linear Iterative Partial Least Squares (NIPALS) algorithm
Phylogeny and quantitative traits of teleos fishes
Results of the French presidential elections of 2002
Within-class coinertia analysis
Phylogeny and quantitative traits of birds
Transformation of a Distance Matrix for becoming Euclidean
Principal Component Analysis with respect to orthogonal instrumental variables
Contingency Table
Genetic Relationships between cattle breeds with microsatellites
Within-Class Analysis
Monte-Carlo Test on the between-groups inertia percentage (in C).
Plant assemblages in woodlands of the conurbation of Angers (France)
Monte-Carlo Test on a Discriminant Analysis (in R).
Multiple Graphs for the Foucart's Correspondence Analysis
Generic Function for Multiple Graphs in a K-tables Analysis
Monte-Carlo Test on a Discriminant Analysis (in C).
Phylogeny and trait of bacteria
human mitochondrial DNA restriction data
Monte-Carlo Test on the sum of the singular values of a procustean rotation (in C).
Monte-Carlo Test on the between-groups inertia percentage (in R).
Representation of a value in a graph
Ordination Table
Simple Procruste Rotation between two sets of points
Indirect Ordination
Array of Recapture of Rings
Two-fold cross-validation
Creating a K-tables from a list of data frames.
Monte-Carlo test on a Co-inertia analysis (in C).
Creation of a K-tables from a list of duality diagrams
Avifauna and Vegetation
1D plot of a numeric score with labels
Compute or scale data using (weighted) means, variances and
covariances (possibly for the levels of a factor)
1D plot of a pair of numeric scores with labels
STATIS and Co-Inertia : Analysis of a series of paired ecological tables
Average temperatures of 30 French cities
Morphometric Evolution
Two Questions asked on a Sample of 1000 Respondents
Pair of Ecological Data
Class of the Permutation Tests (in R).
Graph of frequency profiles (useful for instance in genetic)
Correspondence Analysis Table
Ecological Data : sites-variables, sites-species, where and when
Within-Class RLQ analysis
Bootstraped simulations for multiblock methods
Olympic Decathlon
Multiblock principal component analysis with instrumental variables
Triangular Plotting
Simplified Analysis in Principal Coordinates
Distribution of of tropical trees along the Panama canal
French Worker Survey (1970)
Trajectory Plot
Physico-Chemistry Data
Multivariate spatial autocorrelation test
Multiple Factorial Analysis
Class of the Permutation Tests (in C).
RLQ analysis
Plot of the factorial maps for a correspondence analysis
Freshwater fish zoogeography in west Africa
Graphs to Analyse a factor in PCA
Plot of the Factorial Maps
Plot of factorial maps with representation of point classes
Phylogenetic and quantitative traits of amazonian palm trees
Plot of the factorial maps of a correlation circle
Neighbourhood Graphs
Taxonomy and quantitative traits of carnivora
Plot arrays in front of a phylogenetic tree
Transect in the Vegetation
Projections of Supplementary Columns
Plot of the arrays by grey levels
Contingency Table with a partition in Molecular Biology
Graphs to Analyse a factor in a Mixed Analysis
Scatter Plot
Normed within principal component analysis
Partial Triadic Analysis of a K-tables
Representation of an object in a graph by a picture
Phylogeny and quantitative traits of ungulates.
Homogeneous Table
Permutation test for double principal coordinate analysis (DPCoA)
Phylogeny
Triangular Representation and Groups of points
Monte-Carlo Test on the sum of the singular values of a procustean rotation (in R).
Internal Correspondence Analysis
Elimination of Duplicated Rows in a Array
Graph to Analyse the Relation between a Score and Quantitative Variables
Representation of the link between a variable and a set of qualitative variables
Road distances in New-Zealand
Distance Matrices
Monte-Carlo Test on the percentage of explained (i.e.
constrained) inertia
1D plot of a numeric score and a factor with labels
Graphs for One Dimension
Plot of the factorial maps for the projection of a vector basis
Projection of additional items in a PCO analysis
Plot of the factorial maps with polygons of contour by level of a factor
Graph of a variable using image and contour
Projections of Supplementary Rows
Scatter Plot with Kernel Density Estimate
Example for Centring in PCA
Function to perform a test of dimensionality
Mountain Avifauna
Vegetation in Trois-Fontaines
Plot of the Arrays
Plot of the factorial maps for a fuzzy correspondence analysis
Examples of taxonomy
Graphical utility functions
Relationships between one score and qualitative variables
Representation by mean- standard deviation of a set of weight distributions on a numeric score
Students and Subjects
Plot of Contingency Tables
Separated Analyses in a K-tables
Phylogeny and quantitative traits of flowers
Graph Display for Distance Matrices
Partition of the variation of a response multivariate table by 2 explanatory tables
The phylogenetic ANOVA
Morphological Study of the Painted Turtle