⚠️There's a newer version (1.32.0) of this package.Take me there.

affyPara (version 1.30.0)

Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

Description

The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.

Copy Link

Version

1.30.0

License

GPL-3

Maintainer

Markus Schmidberger

Last Published

February 15th, 2017

Functions in affyPara (1.30.0)

bgCorrectPara

Parallelized Background Correction

Parallel Quality Assessment Summary

preproPara

Parallelized preprocessing

boxplotPara

Parallelized Box Plots for Microarray Data

normalizeAffyBatchQuantilesPara

Parallelized quantile normalization

normalizeAffyBatchLoessIterPara

Parallelized partial loess normalization with permutation

distributeFiles

Distribute files to slaves

MAplotPara

Parallelized relative M vs. A plots for Microarray Data

mergeSplitObjects

Merge a list of split objects

vsnInputPara

Class to contain input data and parameters for parallel vsn functions

computeExprSetPara

Parallel generate a set of expression values

rmaPara

Parallelized PMA preprocessing

normalizeAffyBatchConstantPara

Parallelized scaling normalization

readAffybatchPara

Parallelized Read-AffyBatch function

removeDistributedFiles

Remove distributed files from slaves

snow-startstop

Starting and Stopping SNOW Clusters

normalizeAffyBatchInvariantsetPara

Parallelized Invariante Set normalization

normalizeAffyBatchLoessPara

Parallelized loess normalization

splitObjects

Functions to split objects into parts

vsnPara

Parallel fir of the vsn model