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affycomp (version 1.48.0)

Graphics Toolbox for Assessment of Affymetrix Expression Measures

Description

The package contains functions that can be used to compare expression measures for Affymetrix Oligonucleotide Arrays.

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Version

Version

1.48.0

License

GPL (>= 2)

Maintainer

Rafael A Irizarry

Last Published

February 15th, 2017

Functions in affycomp (1.48.0)

affycomp.compfigs.auxiliary

Auxiliary functions to create comparitive Figures
affycomp.figures.auxiliary

Auxiliary functions to create Figures
assessSpikeIn

Assessment functions for Spike In Data
exprset.log

Take log base 2 of Expression
hgu133a.spikein.phenodata

phenotypic information for HGU133A spike in study
assessSD

SD Assessment functions
assessAll

Assessment functions
assessDilution

Assessment functions for Dilution Data
spikein.phenodata

phenotypic information for spike in study
assessSpikeIn2

New Assessment functions for Spike In Data
dilution.phenodata

Phenotypic Information for Dilution Study
remove.hgu133a.xhyb

Remove crosshybridizers
hgu133a.spikein.xhyb

Cross hybridizers
SD

SD Assessment Functions
affycompTable

Expression Assessment Table
affycompPlot

Assessment Plots
mas5.assessment

Example of the result of assessments
readin

Read Expression Date Sets