affycomp (version 1.48.0)

assessAll: Assessment functions

Description

Assessment functions. Takes a couple of ExpressionSet, one for spike in another for the dilution and returns a list with necessary information to create assessment plots.

Usage

assessAll(d,s,method.name=NULL,verbose=TRUE)
affycomp(d,s,method.name=NULL,verbose=TRUE,return.it=TRUE)

Arguments

d

An ExpressionSet containing the expression measures for the Gene Logic's dilution experiment.

s

An ExpressionSet containing expression measures for the Affymetrix's spike-in experiment.

method.name

Name of expression measure being assessed.

verbose

verbosity flag.

return.it

if TRUE returns assessment lists.

Value

Lists with the necessary information to make the Figures.

Details

assessAll performs assessments for Figures 1-6. It is a wrapper for assessDilution and assessSpikeIn.

affycomp is a wrapper that does it all... including the plotting and creation of table.