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altcdfenvs (version 2.34.0)

alternative CDF environments (aka probeset mappings)

Description

Convenience data structures and functions to handle cdfenvs

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Version

Version

2.34.0

License

GPL (>= 2)

Maintainer

Laurent Gautier

Last Published

February 15th, 2017

Functions in altcdfenvs (2.34.0)

CdfEnvAffy-class

Class "CdfEnvAffy"
AffyProbesMatch-class

Class "AffyProbesMatch"
toHypergraph

Transform to an hypergraph
read.FASTA.entry

Functions to work with FASTA files / connections
getxy.probeseq

A function to get the XY coordinates from a probes sequences data frame
unique.CdfEnvAffy

Remove duplicated elements from a CdfEnvAffy
removeIndex

A function to remove probes in an environment
appendCdfEnvAffy

append probe sets to a CdfEnvAffy
validAffyBatch

Check validity of a CdfEnvAffy.
plot.CdfEnvAffy

A function to `plot' a CdfEnvAffy
copyCdfEnvAffy

make a copy of a CdfEnvAffy
cdfenvs

functions related to cdfenvs
geneNames.CdfEnvAffy

get the names of the known probe sets
matchAffyProbes

Match the probes on an Affymetrix array
indexProbes.CdfEnvAffy

indexes for probes
index2xy

Functions to shuttle from indexes to XY coordinates
countduplicated

Count the number of times probes are used
buildCdfEnv.biostrings

Build CDF environments
cdfenvEx

CdfEnvAffy