Usage
wrapCdfEnvAffy(cdfenv, nrow.chip, ncol.chip, chiptype, check = TRUE, verbose = FALSE)
getCdfEnvAffy(abatch)
buildCdfEnv.matchprobes(matches, ids, probes.pack, abatch=NULL, nrow.chip=NULL, ncol.chip=NULL, chiptype=NULL, mm=NA, simplify = TRUE, x.colname = "x", y.colname = "y", verbose=FALSE)
Arguments
cdfenv
A cdfenv environment
check
perform consistency check or not
chiptype
A name for the chip type
ids
a vector of probe set identifiers for the matches
matches
a list as returned by the function
combineAffyBatch
mm
The value to store for MMs
ncol.chip
The number of columns for the chip type
nrow.chip
The number of rows for the chip type
probes.pack
The name of the probe package
simplify
Simplify the environment created by removing the ids
without any matching probe
x.colname, y.colname
see the getxy.probeseq
verbose
verbosity (TRUE or FALSE)