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ampliQueso (version 1.10.0)

Analysis of amplicon enrichment panels

Description

The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq

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Version

Version

1.10.0

License

GPL-2

Maintainer

Michal Okoniewski

Last Published

February 15th, 2017

Functions in ampliQueso (1.10.0)

ndMin

ampliQueso sample data
compareCoveragesReg

compareCoveragesReg - calculating given camel measures for a list of regions specified by a BED file (sequential and parallel versions)
getSNP

getSNP - finding SNPs in all samples for regions specified by a BED file all regions if BED file not provided (sequential and parallel versions)
getCountTable

getCountTable - obtaining typical count table.
camelSampleTable

ampliQueso sample data
ndMax

ampliQueso sample data
runAQReport

runAQReport - runing the AmpliQueso report
camelTest

camelTest - calculating permutation tests for camel measures (sequential and parallel versions)
compareCoverages

compareCoverages - camel measure for a single comparison.