compareCoverages

Chromosome of the region of interest 
    

Name of the attribute/group in the experimental description (i.e. covdesc)
    

group

First name of the attribute used for grouping
    

Another name of the attribute used for grouping
    

Method of comparison for the coverages in the selected genomic region
    

Covdesc-like data frame - BAM files are read from row names
    


Comparing coverage profiles with the camel measures for the two groups of BAM files, for a given genomic region. 


The package provides tools and reports for the analysis of
amplicon sequencing panels, such as AmpliSeq

Name of the attribute/group in the experimental description (i.e. covdesc)

First name of the attribute used for grouping

Another name of the attribute used for grouping

Method of comparison for the coverages in the selected genomic region

Covdesc-like data frame - BAM files are read from row names

Comparing coverage profiles with the camel measures for the two groups of BAM files, for a given genomic region.