annmap (version 1.14.0)

annmapAll: annmap 'all' functions

Description

Get all annotations for a given feature. For example, allGenes will return data for all the genes in the genome.

Usage

allArrays( as.vector=FALSE ) allChromosomes( as.vector=FALSE ) allDomains( as.vector=FALSE ) allEstExons( as.vector=FALSE ) allEstGenes( as.vector=FALSE ) allEstTranscripts( as.vector=FALSE ) allExons( as.vector=FALSE ) allGenes( as.vector=FALSE ) allPredictionTranscripts( as.vector=FALSE ) allProbes( as.vector=FALSE ) allProbesets( as.vector=FALSE ) allProteins( as.vector=FALSE ) allSymbols( as.vector=FALSE ) allSynonyms( as.vector=FALSE ) allTranscripts( as.vector=FALSE )

Arguments

as.vector

If TRUE returns a vector of database identifiers. If FALSE returns a GRanges object containing detailed annotation.

Value

Returns a vector or GRanges object, as defined by as.vector.

See Also

annmapTo annmapDetails annmapRange annmapUtils annmapFilters GRanges

Examples

  if(interactive()) {
    annmapConnect()	
    allChromosomes()
    allChromosomes(as.vector=TRUE)
  }