annmap (version 1.14.0)

annmapEnv: annmap 'env' functions

Description

Functions to access internal parameters

Usage

annmapEnv() annmapGetParam( key ) annmapSetParam( ... )

Arguments

...

A list of key-value parameters you wish to set.

key

The key for the value you want to return.

Details

These functions allow some access to annmap\'s configuration data. They are included to help debug database connection issues, and are not normally needed.

On connection, a default arraytype (Affymetrix Exon arrays, where available) is specfied for the probe mappings. arrayType allows a different type of array to be specfied. This included for future compatibility.

See Also

annmapTo annmapDetails annmapAll annmapRange annmapFilters

Examples

  if(interactive()) {
    annmapEnv()
    annmapGetParam( "debug" )
    annmapConnect()
    annmapSetParam( debug=TRUE)
    annmapConnect()
    annmapSetParam( debug=FALSE)
    annmapDisconnect()
  }