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apComplex (version 2.32.0)

Estimate protein complex membership using AP-MS protein data

Description

Functions to estimate a bipartite graph of protein complex membership using AP-MS data.

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Version

Version

2.32.0

License

LGPL

Maintainer

Denise Scholtens

Last Published

February 15th, 2017

Functions in apComplex (2.32.0)

LCjoin

Computes change in LxC measure
AP-MS complexes

AP-MS data complex estimates
bhmaxSubgraph

Find maximal BH-complete subgraph
apEX

Example data set for apComplex package
Krogan

High-Definition Macromolecular Composition of Yeast RNA-Processing Complexes (2004)
gavinBP2006

Tandem Affinity Purification (TAP) Data from Gavin et al. (2006)
kroganBPMat2006

Tandem Affinity Purification (TAP) Data from Krogan et al. (2006)
HMSPCI

High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002)
HMSPCI complexes

HMSPCI data complex estimates
findComplexes

Estimate a Protein Complex Membership Graph (PCMG) using protein complex comembership data from AP-MS technology
mergeComplexes

Iteratively combine columns in initial PCMG estimate
Krogan complexes

Krogan data complex estimates
plotComplex

Render complex estimates
yNameTAP complexes

TAP data complex estimates using standard gene names
yTAP

yTAP Complexes published Gavin, et al. (2002).
TAP complexes

TAP data complex estimates
sortComplexes

Sort complex estimates
TAP

Tandem Affinity Purification (TAP) Data from Gavin et al. (2002)