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apComplex (version 2.32.0)
Estimate protein complex membership using AP-MS protein data
Description
Functions to estimate a bipartite graph of protein complex membership using AP-MS data.
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2.38.0
2.36.0
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2.32.0
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Version
2.32.0
License
LGPL
Maintainer
Denise Scholtens
Last Published
April 27th, 2012
Functions in apComplex (2.32.0)
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LCjoin
Computes change in LxC measure
AP-MS complexes
AP-MS data complex estimates
bhmaxSubgraph
Find maximal BH-complete subgraph
apEX
Example data set for apComplex package
Krogan
High-Definition Macromolecular Composition of Yeast RNA-Processing Complexes (2004)
gavinBP2006
Tandem Affinity Purification (TAP) Data from Gavin et al. (2006)
kroganBPMat2006
Tandem Affinity Purification (TAP) Data from Krogan et al. (2006)
HMSPCI
High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002)
HMSPCI complexes
HMSPCI data complex estimates
findComplexes
Estimate a Protein Complex Membership Graph (PCMG) using protein complex comembership data from AP-MS technology
mergeComplexes
Iteratively combine columns in initial PCMG estimate
Krogan complexes
Krogan data complex estimates
plotComplex
Render complex estimates
yNameTAP complexes
TAP data complex estimates using standard gene names
yTAP
yTAP Complexes published Gavin, et al. (2002).
TAP complexes
TAP data complex estimates
sortComplexes
Sort complex estimates
TAP
Tandem Affinity Purification (TAP) Data from Gavin et al. (2002)