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apComplex (version 2.38.0)
Estimate protein complex membership using AP-MS protein data
Description
Functions to estimate a bipartite graph of protein complex membership using AP-MS data.
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Version
2.38.0
2.36.0
2.34.0
2.32.0
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Version
2.38.0
License
LGPL
Maintainer
Denise Scholtens
Last Published
April 27th, 2012
Functions in apComplex (2.38.0)
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yTAP
yTAP Complexes published Gavin, et al. (2002).
apEX
Example data set for apComplex package
TAP complexes
TAP data complex estimates
Krogan
High-Definition Macromolecular Composition of Yeast RNA-Processing Complexes (2004)
bhmaxSubgraph
Find maximal BH-complete subgraph
AP-MS complexes
AP-MS data complex estimates
TAP
Tandem Affinity Purification (TAP) Data from Gavin et al. (2002)
HMSPCI
High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002)
gavinBP2006
Tandem Affinity Purification (TAP) Data from Gavin et al. (2006)
findComplexes
Estimate a Protein Complex Membership Graph (PCMG) using protein complex comembership data from AP-MS technology
LCjoin
Computes change in LxC measure
HMSPCI complexes
HMSPCI data complex estimates
plotComplex
Render complex estimates
mergeComplexes
Iteratively combine columns in initial PCMG estimate
sortComplexes
Sort complex estimates
Krogan complexes
Krogan data complex estimates
kroganBPMat2006
Tandem Affinity Purification (TAP) Data from Krogan et al. (2006)
yNameTAP complexes
TAP data complex estimates using standard gene names