checkValidPhylo

0th

Percentile

Check the Structure of a "phylo" Object

This function takes as single argument an object (phy), checks its elements, and prints a diagnostic. All problems are printed with a label: FATAL (will likely cause an error or a crash) or MODERATE (may cause some problems).

This function is mainly intended for developers creating "phylo" objects from scratch.

Keywords
manip
Usage
checkValidPhylo(phy)
Arguments
phy

an object of class "phylo".

Value

NULL.

Aliases
  • checkValidPhylo
Examples
# NOT RUN {
tr <- rtree(3)
checkValidPhylo(tr)
tr$edge[1] <- 0
checkValidPhylo(tr)
# }
Documentation reproduced from package ape, version 4.1, License: GPL (>= 2)

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