ArrayExplorer: The ArrayExplorer class
Description
Package: aroma.affymetrix
Class ArrayExplorer
Object
~~|
~~+--Explorer
~~~~~~~|
~~~~~~~+--ArrayExplorer
Directly known subclasses:
public abstract static class ArrayExplorer
extends ExplorerUsage
ArrayExplorer(csTuple=NULL, ...)
Fields and Methods
Methods:
rll{
addColorMap -
getAlias -
getAsteriskTags -
getColorMaps -
getDataSet Gets the data set.
getSetTuple -
nbrOfChipTypes -
process Generates image files, scripts and dynamic pages for the explorer.
setAlias -
setArrays Sets the arrays.
setColorMaps -
}
Methods inherited from Explorer:
addIncludes, addIndexFile, display, getAlias, getArraysOfInput, getAsteriskTags, getFullName, getIncludePath, getMainPath, getName, getNameOfInput, getNames, getParallelSafe, getPath, getReportPathPattern, getSampleLayerPrefix, getSubname, getTags, getTagsOfInput, getTemplatePath, nbrOfArrays, process, setAlias, setArrays, setParallelSafe, setReportPathPattern, setSubname, setup, splitByReportPathPattern
Methods inherited from Object:
asThis, getChecksum, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save