UnitModel: The UnitModel class

Description

Package: aroma.affymetrix Class UnitModel Object ~~| ~~+--Model ~~~~~~~| ~~~~~~~+--UnitModel Directly known subclasses: AffineCnPlm, AffinePlm, AffineSnpPlm, AlleleSummation, AvgCnPlm, AvgPlm, AvgSnpPlm, ExonRmaPlm, FirmaModel, HetLogAddCnPlm, HetLogAddPlm, HetLogAddSnpPlm, MbeiCnPlm, MbeiPlm, MbeiSnpPlm, MultiArrayUnitModel, ProbeLevelModel, RmaCnPlm, RmaPlm, RmaSnpPlm, SingleArrayUnitModel public abstract static class UnitModel extends Model This class is abstract and represents a generic unit model, i.e. a model that is applied to each unit separately.

Usage

UnitModel(dataSet=NULL, probeModel=c("pm", "mm", "pm-mm", "min1(pm-mm)", "pm+mm"), shift=0, ...)

Arguments

dataSet

An AffymetrixCelSet to which this model should be fitted.

probeModel

A character string specifying how PM and MM values should be modelled. By default only PM signals are used.

shift

An optional amount the signals should be shifted (translated) before fitting the model.

...

Arguments passed to the constructor of Model.

Fields and Methods

Methods: rll{ findUnitsTodo Identifies non-fitted units. getFitSingleCellUnitFunction - } Methods inherited from Model: fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags Methods inherited from Object: asThis, getChecksum, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save