aroma.core (version 3.3.2)

fit.CopyNumberSegmentationModel: Fits the model

Description

Fits the model.

Usage

# S3 method for CopyNumberSegmentationModel
fit(this, arrays=NULL, chromosomes=getChromosomes(this), force=FALSE, ...,
  .retResults=FALSE, verbose=FALSE)

Value

Returns a named list of named lists.

Arguments

arrays

A vector of array indices specifying which arrays to be considered. If NULL, all are processed.

chromosomes

A vector of chromosomes indices specifying which chromosomes to be considered. If NULL, all are processed.

force

If FALSE, the model will not be fitted again if it was already fitted.

...

Additional arguments passed to the segmentation method for the RawGenomicSignals.

.retResults

If TRUE, the segmentation fit structures are returned for each fitted array and chromosome.

verbose

A logical or Verbose.

Additional arguments to the internal fit function

Arguments in ... are passed down to the internal fit function, which means that it is possible to fine tune even further.

Author

Henrik Bengtsson

See Also

For more information see CopyNumberSegmentationModel.