aroma.core (version 3.3.2)

getOutputDataSet.AromaTransform: Gets the transformed data set

Description

Gets the transformed data set, if processed.

Usage

# S3 method for AromaTransform
getOutputDataSet(this, onMissing=c("dropall", "drop", "NA", "error"), ...,
  incomplete=FALSE, className=NULL, force=FALSE, verbose=FALSE)

Value

Returns an AromaMicroarrayDataSet or NULL.

Arguments

...

Arguments passed to static method byPath() of the class of the input AromaMicroarrayDataSet.

onMissing

A character string specifying how non-processed files should be returned. If "drop", they are ignored and not part of the returned data set. If "dropall", NULL is returned unless all files are processed. If "NA", they are represented as a "missing" file. If "error", they are not accepted and an exception is thrown.

incomplete

[DEPRECATED] If the output data set is incomplete, then NULL is returned unless incomplete is TRUE.

force

If TRUE, any in-memory cached results are ignored.

verbose

See Verbose.

Author

Henrik Bengtsson

See Also

For more information see AromaTransform.