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asbio (version 1.5-5)

A Collection of Statistical Tools for Biologists

Description

Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.

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install.packages('asbio')

Monthly Downloads

3,994

Version

1.5-5

License

GPL (>= 2)

Maintainer

Last Published

January 23rd, 2019

Functions in asbio (1.5-5)

May's effective specialization index

Doornik-Hansen test for multivariate normality.

Simple functions for MCMC demonstrations

Tree presence/absence data from Barro Colorado island

Maximum likelihood algorithm for determining the binomial dispersal coefficient

Agresti-Pendergrast test

Calculation and display of concordant and discordant pairs

Mahalanobis distance for two sites using a pooled covariance matrix

Barro Colorado Island Tree Counts

Brunner-Dette-Munk test

Soil potassium analyses from 8 laboratories

Calculates kappa statistic and other classification error statistics

Kullback test for equal covariance matrices.

Monte Carlo hypothesis testing for two samples.

Bayesian graphical summaries for discrete or categorical data.

Atmospheric carbon and D14C measurements

Hodges-Lehman estimator of location

Mack-Skillings test

Animated demonstration of frequentist binomial convergence of probability using a coin flip.

Glucose Levels Following Alcohol Ingestion

Preston diversity analysis

Animated demonstration of density for a continuous pdf

CSIRO d13C-CO2 data from Rubino et al., A revised 1000 year atmospheric 13C-CO2 record from Law Dome and South Pole, Antarctica

Animated depiction of six-sided die throws.

Animated depictions of Lotka-Volterra competition and exploitation models

Alpine soil temperature and moisture time series

Animated depictions of population growth

Baby walking times experimental data

Bat forearm length as a function of bat age

Animation demonstrations of confidence intervals.

Functions for calculating alpha diversity.

Animated depiction of experimental designs

Barplots with error bars (including interval plots)

Bombus pollen data.

Split plot computer chip data from Littell et al. (2006)

Bromus tectorum dataset

Dataset of salary attributes for male and female workers from Ramsey and Schafer (1997)

Anscombe's quartet

Fern environmental sex determination data

Chi plots for diagnosing multivariate independence.

Enzymatic rate data for the phospholipase protein ExoU

R hat MCMC convergence statistic

PCBs and herring egg thickness

Aids and veterans dataset

alfalfa.split.plot

An agricultural split plot design

Bone development data

Ant honeydew data

anm.samp.design

Animated demonstration of randomized sampling designs

exercise.repeated

Repeated measures data for an exercise experiment.

Wood boring beetle data.

Venn probability diagrams for an event with two outcomes

Anolis lizard contingency table data

Agricultural factorial design

PM 2.5 pollutant data from Pocatello Idaho.

Pulldown menus for 'asbio' interactive graphical functions

Conversion of binary digits to decimal numbers

Confidence interval for the product of two proportions

Heart rate data from Milliken and Johnson (2009)

Animated plots of log-likelihood functions

Caribou count data

Huber M-estimator iterative least squares algorithm

Confidence interval for the median

Huber M-estimator of location

Animated plot of least squares function.

Confidence intervals for ratios of proportions when the denominator is known

Loess 2D and 3D smooth plots

Bootstrap CI of M-estimators differences of two samples

Agrostis variabilis cover measurements

Animated plot of the least squares function.

Dataset of mammal traits from Ramsey and Schaefer (1997)

Magnet pain relief data

Multiple pairwise comparison procedure to accompany a Kruskal-Wallis test

Confidence interval estimation for the binomial parameter pi using five popular methods.

Animation of Markov Chain Monte Carlo walks in bivariate normal space

Bayesian linear models with uniform priors

Asthma repeated measures dataset from Littell et al. (2002)

Welch tests controlled for simultaneous inference

Portneuf River longitudinal N and P data

Area under a receiver operating characteristic (ROC) curve

Z and t confidence intervals for mu.

Grizzly bear litter sizes

One sided confidence interval for mu.

Confidence interval for sigma squared.

Potash/cotton strength data

Bivariate boxplots

Agresti crabs dataset

Confidence intervals for the ratio of binomial and multinomial proportions

Confidence intervals for stratified random samples.

Make plots of bivariate normal distributions

Environmental data for the community dataset cliff.sp

Hamilton depression scores before and after drug treatment

Tippett cuckoo egg data

Random draws from a scaled inverse chi-square distribution

A simple function for bootstrapping

Chronic ailment counts for urban and rural women in Australia

Garment Latin square data from Littell et al. (2002)

A multivariate normal dataset for data mining

Angle of azimuth to a boundary.

see.regression.tck

Demonstration of regression mechanics

Contingency data for high school marijuana, alcohol, and cigarette use

Mule deer telemetry data

Mountain goat data from Yellowstone National Park

Yellowstone NP cliff community data

Huber one step M-estimator

Bootstrap confidence intervals

Corn yield data

Visual illusions illustrating human perception errors.

Interactive depiction of ROC curves

Interactive depiction of type I and II error

Maternal deer data

selftest.se.tck1

Interactive self-testing statistical questions

Gibbs sampling of normal hierarchical models

crab gill and body weight data

Modified Levene's test

Fly sex and longevity

Concrete strength dataset for data mining

Fruit weight data from Littell et al. (2002)

Esophageal cancer data modified slightly to create a balanced three-way factorial design

Dissolved levels in locations above and below a town

partial.resid.plot

Partial residual plots for interpretation of multiple regression.

Australian frog calls following fire

Kaplan-Meier survivorship.

Florida state death penalty data

Facebook performance metrics for data mining and machine learning

Fire data from Yellowstone National Park

Permutation test for two and three way factorial designs

trim.ranef.test

Robust test for random factors using trimmed means.

Likelihood ratio test for tabular data

Creosote bush counts

Mouse life expectancy data

Mosquito wing length data

Ipomopsis fruit yield data

Plots confidence intervals and/or bars with letters indicating significant differences for objects from class pairw

Creates plots for one way ANCOVAs

AIC, AICc, BIC, Mallow's Cp, and PRESS evaluation of linear models

Mountain island biogeographic data

Datasets for resource use and availability

Patient responses to myeloma drug treatments

Functions for customizing correlation matrices

Calculates joint confidence intervals for parameters in linear models using a Bonferroni procedure.

Efficiency of a randomized block design compared to a CRD

One sample z-test

Agricultural randomized block design

Visualize the sampling distribution of Pearson's product moment correlation

Normal quantile plots for single or multiple factor levels

Plots a simple linear regression along with confidence and prediction intervals.

Percentage bend correlation

Partial correlations of determination in multiple regression

Nearest neighbor boundary coordinates

Animated and/or snapshot representations of a statistic's sampling distribution

Animated representation of sampling distribution basics

Interactive depiction of the ANOVA mechanism

Whickham contingency table data for smokers and survivorship

Biweight midvariance, and biweight midcorrelation.

Fisher's Rothamsted potato data

Power analysis for a one sample z-test

Mammalian BMR and biomass data from Savage et al. (2004)

prediction sum of squares

One sample t-test

Conducts pairwise post hoc and planned comparisons associated with an ANOVA

Prostate cancer data

Polyamine data from Hollander and Wolfe (1999)

Rat glycogen data from Sokal and Rohlf (2012)

see.cor.range.tck

Depict the effect of range on correlation

Multiple pairwise comparison procedure to accompany a Friedman test.

Refinery CO dataset

Nitrogen content of soils under pika haypiles

Interactive depiction of type I and type II error and power

see.rEffect.tck

Visualize random effects model

see.exppower.tck

Visualize exponential power functions

Veneer data from Littell et al. (2002)

Scandinavian site by species community matrix

White wine quality data for data mining

Plant traits for 136 species

Matched pairs schizophrenia data

Perpendicularity

ANOVA linear models

Visualize important non-linear functions

Visualize the Hardy Weinberg equilibrium

SO2 data for 32 US cities with respect to 6 explanatory variables

World CO2 levels, by country, from 1980 to 2006

see.accPrec.tck

Interactive depiction of precision and accuracy

Jacknife pseudo-values

Visualization of the M-estimation function

Jackknife standard error from a set of pseudovalues

Regression linear model derivation from linear algebra

CO2 exchange time series data

Unbalanced and balanced linear models

Interactive smoother demonstrations

Visualize t-tests

Variance and standard error estimators for the sampling distribution of the sample mean

GUI display of probability

Compilations of genus and species counts from Simberloff (1970)

Visualize ANCOVA mechanics

Robust one way trimmed means test.

DEM data from the Starkey experimental forest in NE Oregon

del14C in the atmosphere from 1700-1950

Population levels in various countries from 1980-2006

Sample skewness and kurtosis

Interactive worksheet for logical and fallacious arguments

Tukey's test of additivity.

Wildebeest carcass categorical data

Depiction of the effect of random level selection on inferences concerning fixed effects

Interactive depiction of the multinomial distribution

Interactive visualization of least squares regression.

American gizzard shad data

Shading functions for interpretation of pdf probabilities.

Salsify height dataset

Transition matrix analysis

Species richness and environmental variables from Mt Washburn

Snoring and heart disease contingency data

Spider web length data