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asbio (version 1.6-5)

A Collection of Statistical Tools for Biologists

Description

Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.

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Version

Install

install.packages('asbio')

Monthly Downloads

2,212

Version

1.6-5

License

GPL (>= 2)

Maintainer

Ken Aho

Last Published

June 29th, 2020

Functions in asbio (1.6-5)

Soil potassium analyses from 8 laboratories

Calculation and display of concordant and discordant pairs

Brunner-Dette-Munk test

Doornik-Hansen test for multivariate normality.

Calculates kappa statistic and other classification error statistics

Simple functions for MCMC demonstrations

PCBs and herring egg thickness

Mahalanobis distance for two sites using a pooled covariance matrix

May's effective specialization index

Bayesian graphical summaries for discrete or categorical data.

Atmospheric carbon and D14C measurements

Tree presence/absence data from Barro Colorado island

Agresti-Pendergrast test

Fern environmental sex determination data

Animated demonstration of frequentist binomial convergence of probability using a coin flip.

Kullback test for equal covariance matrices.

Monte Carlo hypothesis testing for two samples.

CSIRO d13C-CO2 data from Rubino et al., A revised 1000 year atmospheric 13C-CO2 record from Law Dome and South Pole, Antarctica

PM 2.5 pollutant data from Pocatello Idaho.

Animated demonstration of density for a continuous pdf

Functions for calculating alpha diversity.

Bayesian linear models with uniform priors

Split plot computer chip data from Littell et al. (2006)

Animated depiction of six-sided die throws.

Glucose Levels Following Alcohol Ingestion

Mack-Skillings test

Animated depiction of experimental designs

Alpine soil temperature and moisture time series

Agrostis variabilis cover measurements

Animation demonstrations of confidence intervals.

Venn probability diagrams for an event with two outcomes

Animated depictions of population growth

Conversion of binary digits to decimal numbers

Maximum likelihood algorithm for determining the binomial dispersal coefficient

Animated depictions of Lotka-Volterra competition and exploitation models

Animated plots of log-likelihood functions

Determine agreement of two classifications

Anscombe's quartet

Confidence interval estimation for the binomial parameter pi using five popular methods.

Animated plot of least squares function.

One sided confidence interval for mu.

Wood boring beetle data.

Ant honeydew data

Barro Colorado Island Tree Counts

Bombus pollen data.

Animated plot of the least squares function.

Pulldown menus for 'asbio' interactive graphical functions

Bone development data

Animation of Markov Chain Monte Carlo walks in bivariate normal space

Confidence intervals for the ratio of binomial and multinomial proportions

Confidence intervals for ratios of proportions when the denominator is known

Angle of azimuth to a boundary.

Environmental data for the community dataset cliff.sp

Dataset of mammal traits from Ramsey and Schaefer (1997)

Dataset of salary attributes for male and female workers from Ramsey and Schafer (1997)

Area under a receiver operating characteristic (ROC) curve

Asthma repeated measures dataset from Littell et al. (2002)

A simple function for bootstrapping

Tippett cuckoo egg data

Yellowstone NP cliff community data

Hodges-Lehman estimator of location

Bootstrap CI of M-estimators differences of two samples

Dissolved levels in locations above and below a town

Bootstrap confidence intervals

Chi plots for diagnosing multivariate independence.

Welch tests controlled for simultaneous inference

Confidence interval for the product of two proportions

Mountain goat data from Yellowstone National Park

Maternal deer data

Modified Levene's test

Huber M-estimator of location

Barplots with error bars (including interval plots)

Mountain island biogeographic data

Polyamine data from Hollander and Wolfe (1999)

Efficiency of a randomized block design compared to a CRD

Preston diversity analysis

Hamilton depression scores before and after drug treatment

Agricultural factorial design

Huber one step M-estimator

Functions for customizing correlation matrices

R hat MCMC convergence statistic

Portneuf River longitudinal N and P data

Aids and veterans dataset

Magnet pain relief data

Rat glycogen data from Sokal and Rohlf (2012)

Chronic ailment counts for urban and rural women in Australia

A multivariate normal dataset for data mining

Percentage bend correlation

Partial correlations of determination in multiple regression

Gibbs sampling of normal hierarchical models

Grizzly bear litter sizes

Animated and/or snapshot representations of a statistic's sampling distribution

Enzymatic rate data for the phospholipase protein ExoU

Unbalanced and balanced linear models

alfalfa.split.plot

An agricultural split plot design

Concrete strength dataset for data mining

anm.samp.design

Animated demonstration of randomized sampling designs

partial.resid.plot

Partial residual plots for interpretation of multiple regression.

Interactive worksheet for logical and fallacious arguments

Creosote bush counts

Fire data from Yellowstone National Park

Plant traits for 136 species

Mouse life expectancy data

Fly sex and longevity

Plots confidence intervals and/or bars with letters indicating significant differences for objects from class pairw

Power analysis for a one sample z-test

Interactive depiction of type I and type II error and power

AIC, AICc, BIC, Mallow's Cp, and PRESS evaluation of linear models

Creates plots for one way ANCOVAs

Make plots of bivariate normal distributions

Loess 2D and 3D smooth plots

Prostate cancer data

Anolis lizard contingency table data

Caribou count data

Corn yield data

Perpendicularity

prediction sum of squares

Baby walking times experimental data

Snoring and heart disease contingency data

Plots a simple linear regression along with confidence and prediction intervals.

Jackknife standard error from a set of pseudovalues

Bromus tectorum dataset

Likelihood ratio test for tabular data

Garment Latin square data from Littell et al. (2002)

Visualize ANCOVA mechanics

Heart rate data from Milliken and Johnson (2009)

Bat forearm length as a function of bat age

Matched pairs schizophrenia data

Bivariate boxplots

Confidence interval for the median

ANOVA linear models

Regression linear model derivation from linear algebra

crab gill and body weight data

Confidence interval for sigma squared.

Robust one way trimmed means test.

Z and t confidence intervals for mu.

Huber M-estimator iterative least squares algorithm

Confidence intervals for stratified random samples.

SO2 data for 32 US cities with respect to 6 explanatory variables

Interactive visualization of least squares regression.

Multiple pairwise comparison procedure to accompany a Friedman test.

trim.ranef.test

Robust test for random factors using trimmed means.

Agresti crabs dataset

Multiple pairwise comparison procedure to accompany a Kruskal-Wallis test

exercise.repeated

Repeated measures data for an exercise experiment.

Florida state death penalty data

Mule deer telemetry data

Facebook performance metrics for data mining and machine learning

Visualize t-tests

Permutation test for two and three way factorial designs

Contingency data for high school marijuana, alcohol, and cigarette use

Nitrogen content of soils under pika haypiles

Visualize important non-linear functions

Jacknife pseudo-values

Normal quantile plots for single or multiple factor levels

Calculates joint confidence intervals for parameters in linear models using a Bonferroni procedure.

Esophageal cancer data modified slightly to create a balanced three-way factorial design

Interactive depiction of the ANOVA mechanism

Interactive depiction of ROC curves

Transition matrix analysis

Interactive depiction of type I and II error

Random draws from a scaled inverse chi-square distribution

Kaplan-Meier survivorship.

Refinery CO dataset

Interactive smoother demonstrations

Depiction of the effect of random level selection on inferences concerning fixed effects

Datasets for resource use and availability

Mosquito wing length data

Interactive depiction of the multinomial distribution

Compilations of genus and species counts from Simberloff (1970)

World CO2 levels, by country, from 1980 to 2006

One sample t-test

Sample skewness and kurtosis

Population levels in various countries from 1980-2006

Australian frog calls following fire

Fruit weight data from Littell et al. (2002)

Tukey's test of additivity.

Patient responses to myeloma drug treatments

White wine quality data for data mining

Ipomopsis fruit yield data

Visual illusions illustrating human perception errors.

Biweight midvariance, and biweight midcorrelation.

One sample z-test

Veneer data from Littell et al. (2002)

Visualize the sampling distribution of Pearson's product moment correlation

Spider web length data

Agricultural randomized block design

CO2 exchange time series data

Nearest neighbor boundary coordinates

Visualize the Hardy Weinberg equilibrium

see.accPrec.tck

Interactive depiction of precision and accuracy

Visualization of the M-estimation function

see.rEffect.tck

Visualize random effects model

Conducts pairwise post hoc and planned comparisons associated with an ANOVA

Potash/cotton strength data

Fisher's Rothamsted potato data

selftest.se.tck1

Interactive self-testing questions

see.regression.tck

Demonstration of regression mechanics

Animated representation of sampling distribution basics

see.cor.range.tck

Depict the effect of range on correlation

Mammalian BMR and biomass data from Savage et al. (2004)

American gizzard shad data

Variance and standard error estimators for the sampling distribution of the sample mean

Scandinavian site by species community matrix

Species richness and environmental variables from Mt Washburn

DEM data from the Starkey experimental forest in NE Oregon

see.exppower.tck

Visualize exponential power functions

Shading functions for interpretation of pdf probabilities.

GUI display of probability

del14C in the atmosphere from 1700-1950

Salsify height dataset

Whickham contingency table data for smokers and survivorship

Wildebeest carcass categorical data