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babsim.hospital (version 11.5.14)

Bartz & Bartz Simulation Hospital

Description

Implements a discrete-event simulation model for a hospital resource planning problem. The project is motivated by the challenges faced by health care institutions in the current COVID-19 pandemic. It can be used by health departments to forecast demand for intensive care beds, ventilators, and staff resources. Our modelling approach is inspired by "A novel modelling technique to predict resource requirements in critical care - a case study" (Lawton and McCooe 2019) and combines two powerful technologies: (i) discrete event simulation using the 'simmer' package and (ii) model-based optimization using 'SPOT'. Ucar I, Smeets B, Azcorra A (2019) . Bartz-Beielstein T, Lasarczyk C W G, Preuss M (2005) . Lawton T, McCooe M (2019) .

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Version

Install

install.packages('babsim.hospital')

Monthly Downloads

124

Version

11.5.14

License

GPL (>= 2)

Maintainer

Thomas Bartz-Beielstein

Last Published

December 14th, 2020

Functions in babsim.hospital (11.5.14)

dataICUBeds20200821

dataICUBeds20200821
checkSimPara

checkSimPara
babsimToolsConf

babsimToolsConf
babsimHospital

babsimHospital
dataCovidBeds20200624

dataCovidBeds20200624
ensureRangeOpen

ensureRangeOpen
babsimHospitalPara

babsimHospitalPara
ex1InfectedDf

ex1InfectedDf
bundeslanddata

bundeslanddata data
GABeds220200624

GABeds220200624 Intensivbetten: Daten vom 24.6.2020
getMatrixD

getMatrixD
getDecision

getDecision
extendRki

extendRki Erweiterung der RKI Daten
getMatrixP

getMatrixP
getRealBeds

getRealBeds
getRegionIcu

getRegionIcu Auswahl der ICU Daten fuer eine Region
getBounds

getBounds
getBestParameter

Return the best parameter set found
getTrainTestObjFun

getTrainTestObjFun
getSyntheticData

getSyntheticData
envToTibble

envToTibble
getError

getError
getArrivalTimes

getArrivalTimes
getInfectedPerDay

getInfectedPerDay
getAgeGroup

getAgeGroup
getIcuBeds

getIcuBeds
getConfFromData

getConfFromData
getRkiRisk

getRkiRisk
obkpara

obkpara data
getDailyMaxResults

getDailyMaxResults
getStartParameter

getStartParameter
obkarchive

obkarchive archived obk data
getPeakVec

getPeakVec
getRealAge

getRealAge
getExpCoeff

getExpCoeff
ggVisualizeRkiAge

ggVisualizeRkiAge Visualisation of the pre-processed RKI Data with respect to age and gender
ggVisualizeRkiEvents

ggVisualizeRkiEvents Visualisation of the pre-processed RKI Data
getParameterName

getParameterName
modelResultHospital

modelResultHospital
mapXToPara

mapXToPara
ggVisualizeRki

ggVisualizeRki ggPlot Visualisierung der RKI Daten
getParameterNameList

getParameterNameList
plotPostprocessedEnvs

plotPostprocessedEnvs
plotDailyMaxResults

plotDailyMaxResults
ggVisualizeIcu

ggVisualizeIcu Visualisierung der ICU Daten
koelnpara

koelnpara data
mapPToPara

mapPToPara
getRkiData

getRkiData
getDiviLinks

Retrieve links to all DIVI day reports.
getRegionRki

getRegionRki Auswahl der RKI Daten fuer eine Region
rkidata

rkidata: Aktuelle RKI COVID-19 Daten
smoothParameter

Smooth a parameter set using another parameter set
rkiToBabsimArrivals

rkiToBabsimArrivals
koelnarchive

koelnarchive archived koeln data
icudata

icudata IntensivbettenDaten (aktueller Stand)
rtgamma

rtgamma
printConf

printConf
postprocessEnvs

postprocessEnvs
visualizeGraph

visualizeGraph Visualisierung der Wahrscheinlichkeiten und Dauern
visualizeIcu

visualizeIcu Visualisierung der ICU Daten
visualizeRki

visualizeRki Visualisierung der RKI Daten
softmax

softmax
visualizeRkiEvents

visualizeRkiEvents Visualisation of the pre-processed RKI Data
weighted_rmse

weighted_rmse
funOptimizeSim

funOptimizeSim
funWrapOptimizeSim

funWrapOptimizeSim
getObkData

getObkData
ggVisualizeRkiExtendedDataCalculation

Data precalculation for ggVisualizeRkiExtended
ggVisualizeRkiExtended

ggVisualizeRkiExtended Visualisation of the extended RKI Data
getParameterDataFrame

getParameterDataFrame
nrwarchive

nrwarchive archived nrw data
runOptLocal

runOptLocal
runoptDirect

runoptDirect Optimierung der babsim.hospital Parameter
nrwpara

nrwpara data
rkiToBabsimData

rkiToBabsimData
switchRkiMeldedatumToRefdatum

switchRkiMeldedatumToRefdatum Change RKI data File
switchRkiRefdatumToMeldedatum

switchRkiRefdatumToMeldedatum Change RKI data File
updateIcudataFile

updateIcudataFile Update ICU data File
synthpara

synthpara data
updateMatrixP

updateMatrixP
updateRkidataFile

updateRkidataFile Update RKI data File