Learn R Programming
⚠️There's a newer version (1.3.6) of this package.Take me there.

bcRep (version 1.1)

Advanced Analysis of B Cell Receptor Repertoire Data

Description

Methods for advanced analysis of B cell receptor repertoire data, like gene usage, mutations, clones and diversity and their visualisation.

Copy Link

Version

Install

install.packages('bcRep')

Monthly Downloads

29

Version

1.1

License

GPL-2

Maintainer

Julia Bischof

Last Published

October 12th, 2015

Functions in bcRep (1.1)

ntseqtab

Summary of nucleotide sequences of B cells of one individual
aaseqtab

Summary of amino acid sequences of B cells of one individual
clones.ind

Data frame: clones of one individual
sequences.junctionFrame

Summary of junction frames of sequences
sequences.getAnyFunctionality

Filter for productive or unproductive sequences
sequences.geneComb

Gene combinations gene families
plotClonesCopyNumber

Copy number of clones
bcRep-package

Advanced Analysis of B Cell Receptor Repertoire Data
sequences.getAnyJunctionFrame

Filter for in-frame or out-of-frame sequences
aaDistribution

Amino acid distribution of sequences
clones

Grouping sequences into clones
sequences.functionality

Summary of functionality of sequences
readIMGT

Read IMGT/HighV-QUEST output files
trueDiversity

True diversity of sequences
sequences.mutation

Basic statistics on mutations of sequences
clones.allind

B cell clones of 8 individuals
summarytab

Summary information of B cells of one individual
clones.CDR3Length

CDR3 length distribution of clones
clones.shared

Shared clones between individuals
mutationtab

Summary of mutations cells
geneUsage

Gene usage of clones