Compare gene usage of different samples
Shared clones between samples
Dissimilarity/distance indices for gene usage data
Compare richness or diversity of different samples
Grouping sequences into clones
Advanced Analysis of B Cell Receptor Repertoire Data
Compare amino acid distribution of different samples
Match sequence ID's and clone ID's
Principal coordinate analysis (PCoA; multidimensional scaling [MDS]) of dissimilarity/distance indices
Combination of several IMGT output folders
Gene/gene combinations
Copy number of clones
sequences.getAnyJunctionFrame
Filter for in-frame or out-of-frame sequences
Summary of nucleotide sequences of B cells of one individual
Summary of functionality of sequences
Data frame: clones of one individual
Dissimilarity/distance indices for sequence data
Gene usage statistics
Summary of mutations cells
Read IMGT/HighV-QUEST output files
Detect amino acid mutations in V-, FR- or CDR-regions
sequences.getAnyFunctionality
Filter for productive or unproductive sequences
Summary information of B cells of one individual
Summary of junction frames of sequences
Basic statistics on mutations of sequences
Statistics about silent mutations
True diversity of sequences
VH gene usage data
clones.filterJunctionFrame
Filter for in-frame/out-of-frame clones
Gini index of clones
Filter clones for their size
Summary of amino acid sequences of B cells of one individual
Summary of amino acid sequences of B cells of another individual
B cell clones of 8 individuals
Amino acid distribution of sequences
CDR3 length distribution of clones
clones.filterFunctionality
Filter for productive/unproductive clones