clones.filterJunctionFrame
Filter for in-frame/out-of-frame clones
clones.filterFunctionality
Filter for productive/unproductive clones
Gini index of clones
Data frame: clones of one individual
Basic statistics on mutations of sequences
sequences.getAnyFunctionality
Filter for productive or unproductive sequences
Compare gene usage of different samples
Summary information of B cells of one individual
Principal coordinate analysis (PCoA; multidimensional scaling [MDS]) of dissimilarity/distance indices
Summary of functionality of sequences
Dissimilarity/distance indices for sequence data
True diversity of sequences
sequences.getAnyJunctionFrame
Filter for in-frame or out-of-frame sequences
Amino acid distribution of sequences
Compare amino acid distribution of different samples
Detect amino acid mutations in V-, FR- or CDR-regions
CDR3 length distribution of clones
Compare richness or diversity of different samples
Advanced Analysis of B Cell Receptor Repertoire Data
Summary of nucleotide sequences of B cells of one individual
Summary of amino acid sequences of B cells of one individual
Combination of several IMGT output folders
Copy number of clones
B cell clones of 8 individuals
Summary of junction frames of sequences
Grouping sequences into clones
Base proportion nearby mutations
Gene/gene combinations
VH gene usage data
Summary of amino acid sequences of B cells of another individual
Read IMGT/HighV-QUEST output files
Shared clones between samples
Summary of mutations cells
Dissimilarity/distance indices for gene usage data
Gene usage statistics
Filter clones for their size