bcRep (version 1.3.6)

plotClonesCopyNumber: Copy number of clones

Description

This Function plots the copy number distribution of clones.

Usage

plotClonesCopyNumber(copyNumber = NULL, withOutliers = TRUE, color = "gray",  title = NULL, PDF=NULL, ...)

Arguments

copyNumber

Vector of copy numbers of clones

withOutliers

Shall outliers (anything bigger than 75

color

color used for plots (default: gray)

title

title of the plot (optional)

PDF

PDF project name (see Details)

...

Details

The PDF character string should be only the project name (without ".pdf").

A figure called "PDF"_Clone_copy_number.pdf will be saved to the working directory.

See Also

clones.CDR3Length, plotClonesCDR3Length

Examples

data(clones.ind)
## Not run: plotClonesCopyNumber(copyNumber = clones.ind$total_number_of_sequences, 
#      color = "red", title = "Copy number distribution")## End(Not run)