ber v3.0


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Batch Effects Removal

The functions in this package remove batch effects from microarrary normalized data. The expression levels of the genes are represented in a matrix where rows correspond to independent samples and columns to genes (variables). The batches are represented by categorical variables (objects of class factor). When further covariates of interest are available they can be used to remove efficiently the batch effects and adjust the data.

Functions in ber

Name Description
ber_bg Batch Effects Removal using Bagging
mean_centering mean_centering
ber Batch Effects Removal
standardization standardization
combat_p parametric combat
combat_np non-parametric combat
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Type Package
Date 2012-21-03
License GPL-2
LazyLoad yes
Packaged 2012-03-21 20:29:15 UTC; marco
Repository CRAN
Date/Publication 2012-03-22 08:37:55
suggests golubEsets , MASS , vsn
Contributors Marco Giordan

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