Package: |
biocViews |
Version: |
1.11.4 |
Depends: |
R (>= 2.4.0), methods, utils |
Imports: |
tools, Biobase, graph (>= 1.9.26), RBGL (>= 1.13.5), XML |
Suggests: |
Biobase |
License: |
Artistic-2.0 |
URL: |
http://www.bioconductor.org/packages/release/BiocViews.html |
biocViews: |
Infrastructure |
Index:
BiocView-class Class "BiocView" Htmlized-class Class "Htmlized" PackageDetail-class Class "PackageDetail" RepositoryDetail-class Class "RepositoryDetail" biocViewsVocab Bioconductor Task Views Vocabulary Data extractVignettes Extract pdf vignettes from local package repository genReposControlFiles Generate CRAN-style repository control files getBiocSubViews Build a list of BiocView objects from a package repository getBiocViews Build a list of BiocView objects from a package repository getPacksAndViews Parse VIEWS file for views and packages getSubTerms Retrieve a term and its children from a vocab DAG htmlDoc Create a complete HTML document representation of an object htmlFilename Return a filename for an object's HTML representation htmlValue HTML Representation of an Object writeBiocViews Write a list of BiocView objects to HTML writeHtmlDoc Write an XML DOM containing HTML to a file writePackageDetailHtml Write HTML files for packages in a CRAN-style repository writeRepositoryHtml Write package descriptions and a repository index as HTML writeTopLevelView Write the view for the root of a vocabulary to disk write_REPOSITORY Write a REPOSITORY control file for a CRAN-style package repository write_SYMBOLS Write a SYMBOLS file write_VIEWS Write a VIEWS control file for a CRAN-style package repository
The terms of the vocabulary are stored in a DAG, which can be loaded as
the serialized data object biocViewsVocab
. For listing of
available terms use function getSubTerms
.
Further information is available in the following two vignettes:
HOWTO-BCV |
Basic package usage |
createReposHtml |
Further information for repository admins |
data(biocViewsVocab)
getSubTerms(biocViewsVocab, "Technology")
Run the code above in your browser using DataCamp Workspace