biocViews v1.36.2
Categorized views of R package repositories
structures for vocabularies and narratives of views
Functions in biocViews
| Name | Description | |
| getBiocViews | Build a list of BiocView objects from a package repository | |
| RepositoryDetail-class | Class "RepositoryDetail" | |
| validate_bioc_views | Validate a package's biocViews. | |
| extractVignettes | Extract pdf vignettes from local package repository | |
| genReposControlFiles | Generate CRAN-style repository control files | |
| Htmlized-class | Class "Htmlized" | |
| htmlValue | HTML Representation of an Object | |
| writeHtmlDoc | Write an XML DOM containing HTML to a file | |
| writePackageDetailHtml | Write HTML files for packages in a CRAN-style repository | |
| getBiocSubViews | Build a list of BiocView objects from a package repository | |
| PackageDetail-class | Class "PackageDetail" | |
| recommendBiocViews | Recommend biocViews for an existing Package. | |
| getCurrentbiocViews | Get a list of biocViews for each branch | |
| getPackageNEWS | Retrieve and print package NEWS | |
| BiocView-class | Class "BiocView" | |
| write_VIEWS | Write a VIEWS control file for a CRAN-style package repository | |
| biocViews-package | Categorized views of R package repositories | |
| writeBiocViews | Write a list of BiocView objects to HTML | |
| writeTopLevelView | Write the view for the root of a vocabulary to disk | |
| extractTopLevelFiles | Extract files from the top level of source package tarballs | |
| extractNEWS | Extract NEWS files from source package tarballs | |
| htmlFilename | Return a filename for an object's HTML representation | |
| htmlDoc | Create a complete HTML document representation of an object | |
| writeRepositoryHtml | Write package descriptions and a repository index as HTML | |
| writeRFilesFromVignettes | Write R files from vignettes | |
| biocViewsVocab | Bioconductor Task Views Vocabulary Data | |
| getPacksAndViews | Parse VIEWS file for views and packages | |
| extractManuals | Extract Rd man pages and build pdf reference manuals from local package repository | |
| getSubTerms | Retrieve a term and its children from a vocab DAG | |
| write_REPOSITORY | Write a REPOSITORY control file for a CRAN-style package repository | |
| write_SYMBOLS | Write a SYMBOLS file | |
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Details
| Date | 2014-02-11 |
| License | Artistic-2.0 |
| URL | http://www.bioconductor.org/packages/release/BiocViews.html |
| Collate | AllClasses.R AllGenerics.R as-methods.R htmlDoc-methods.R htmlFilename-methods.R htmlValue-methods.R show-methods.R getPackNames.R packageDetails.R pump.R repository.R showvoc.R getPackageNEWS.R validation_tests.R recommendBiocViews.R |
| biocViews | Infrastructure |
| Packaged | 2014-10-16 22:03:48 UTC; dtenenba |
| imports | Biobase , graph (>= 1.9.26) , knitr , methods , RBGL (>= 1.13.5) , RCurl , RUnit , tools , utils , XML |
| suggests | BiocGenerics |
| depends | R (>= 2.4.0) |
| Contributors | Vince Carey, BJ Harshfield, Sonali Arora, Seth Falcon |
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