biocViews v1.36.2

Categorized views of R package repositories

structures for vocabularies and narratives of views

Functions in biocViews

Name Description
getBiocViews Build a list of BiocView objects from a package repository
RepositoryDetail-class Class "RepositoryDetail"
validate_bioc_views Validate a package's biocViews.
extractVignettes Extract pdf vignettes from local package repository
genReposControlFiles Generate CRAN-style repository control files
Htmlized-class Class "Htmlized"
htmlValue HTML Representation of an Object
writeHtmlDoc Write an XML DOM containing HTML to a file
writePackageDetailHtml Write HTML files for packages in a CRAN-style repository
getBiocSubViews Build a list of BiocView objects from a package repository
PackageDetail-class Class "PackageDetail"
recommendBiocViews Recommend biocViews for an existing Package.
getCurrentbiocViews Get a list of biocViews for each branch
getPackageNEWS Retrieve and print package NEWS
BiocView-class Class "BiocView"
write_VIEWS Write a VIEWS control file for a CRAN-style package repository
biocViews-package Categorized views of R package repositories
writeBiocViews Write a list of BiocView objects to HTML
writeTopLevelView Write the view for the root of a vocabulary to disk
extractTopLevelFiles Extract files from the top level of source package tarballs
extractNEWS Extract NEWS files from source package tarballs
htmlFilename Return a filename for an object's HTML representation
htmlDoc Create a complete HTML document representation of an object
writeRepositoryHtml Write package descriptions and a repository index as HTML
writeRFilesFromVignettes Write R files from vignettes
biocViewsVocab Bioconductor Task Views Vocabulary Data
getPacksAndViews Parse VIEWS file for views and packages
extractManuals Extract Rd man pages and build pdf reference manuals from local package repository
getSubTerms Retrieve a term and its children from a vocab DAG
write_REPOSITORY Write a REPOSITORY control file for a CRAN-style package repository
write_SYMBOLS Write a SYMBOLS file
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Last year downloads


Date 2014-02-11
License Artistic-2.0
Collate AllClasses.R AllGenerics.R as-methods.R htmlDoc-methods.R htmlFilename-methods.R htmlValue-methods.R show-methods.R getPackNames.R packageDetails.R pump.R repository.R showvoc.R getPackageNEWS.R validation_tests.R recommendBiocViews.R
biocViews Infrastructure
Packaged 2014-10-16 22:03:48 UTC; dtenenba

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