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biocViews (version 1.36.2)
Categorized views of R package repositories
Description
structures for vocabularies and narratives of views
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Version
1.40.1
1.40.0
1.38.0
1.36.2
1.34.1
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Version
1.36.2
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
February 11th, 2014
Functions in biocViews (1.36.2)
Search functions
getBiocViews
Build a list of BiocView objects from a package repository
RepositoryDetail-class
Class "RepositoryDetail"
validate_bioc_views
Validate a package's biocViews.
extractVignettes
Extract pdf vignettes from local package repository
genReposControlFiles
Generate CRAN-style repository control files
Htmlized-class
Class "Htmlized"
htmlValue
HTML Representation of an Object
writeHtmlDoc
Write an XML DOM containing HTML to a file
writePackageDetailHtml
Write HTML files for packages in a CRAN-style repository
getBiocSubViews
Build a list of BiocView objects from a package repository
PackageDetail-class
Class "PackageDetail"
recommendBiocViews
Recommend biocViews for an existing Package.
getCurrentbiocViews
Get a list of biocViews for each branch
getPackageNEWS
Retrieve and print package NEWS
BiocView-class
Class "BiocView"
write_VIEWS
Write a VIEWS control file for a CRAN-style package repository
biocViews-package
Categorized views of R package repositories
writeBiocViews
Write a list of BiocView objects to HTML
writeTopLevelView
Write the view for the root of a vocabulary to disk
extractTopLevelFiles
Extract files from the top level of source package tarballs
extractNEWS
Extract NEWS files from source package tarballs
htmlFilename
Return a filename for an object's HTML representation
htmlDoc
Create a complete HTML document representation of an object
writeRepositoryHtml
Write package descriptions and a repository index as HTML
writeRFilesFromVignettes
Write R files from vignettes
biocViewsVocab
Bioconductor Task Views Vocabulary Data
getPacksAndViews
Parse VIEWS file for views and packages
extractManuals
Extract Rd man pages and build pdf reference manuals from local package repository
getSubTerms
Retrieve a term and its children from a vocab DAG
write_REPOSITORY
Write a REPOSITORY control file for a CRAN-style package repository
write_SYMBOLS
Write a SYMBOLS file