biomartr (version 0.5.9000)

getSummaryFile: Helper function to retrieve the assembly_summary.txt file from NCBI

Description

Retrieval function of the assembly_summary.txt file from NCBI.

Usage

getSummaryFile(db, kingdom)

Arguments

db

database name. E.g. refseq or genbank.

kingdom

kingdom for which assembly_summary.txt file shall be retrieved. See also getKingdoms.

See Also

getKingdomAssemblySummary, getMetaGenomeSummary

Examples

# NOT RUN {
test <- getSummaryFile("refseq","plant")
test
# }