Bootstrapping for global graph measures
Color graph edges
Give vertices in a graph a lobe attribute.
Color graph vertices
graph_neighborhood_multiple
Take the union of multiple neighborhood graphs
Coordinates for data from the Desikan-Killiany atlas
Contract graph vertices based on brain lobe and hemisphere
Permutation test for group difference of graph vertex measures
Coordinates for data from the Desikan-Killiany-Tourville atlas
Coordinates for data from BrainSuite atlas
Count number of inter-lobar connections from a given major lobe
Coordinates for data from Harvard-Oxford atlas
Coordinates for data from the Destrieux atlas
Coordinates for data from the Desikan-Killiany atlas
Write PNG files for a list of graphs
Calculate graph global, local, or nodal efficiency
Plot group distributions of volumetric measures for a given brain region
Linear models of columns of a data frame
Calculate correlation matrix and threshold
GUI for plotting graphs overlaid on an MNI152 image or in a circle.
Check model residuals for each brain region
Select edges for re-wiring.
Coordinates for data from the AAl116 atlas
Calculate an asymmetry index based on edge counts
Plot a correlation matrix
Calculate graph small-worldness
Transform a vector to have a different range
Calculate graph vulnerability
set.brainGraph.attributes
Set a number of graph and vertex attributes useful in MRI analyses
Plot vertex-level graph measures at a single density
Simulate N random graphs w/ same clustering and degree sequence as the input.
Calculate Euclidean distance between vertices (MNI space)
within_module_deg_z_score
Calculate vertex within-module degree z-score
Coordinates for data from the LONI probabilistic brain atlas
Plot a graph with a specific spatial layout
Apply a rotation matrix to a set of points
Function to dynamically plot a graph
Analysis of network robustness
Calculate the normalized rich club coefficient
Count number of edges between homologous regions of a brain graph
Calculate permutation p-values and plot group differences
Draw an axial or sagittal slice of the MNI152 T1 image
Calculate the rich core of a graph
Write files to be used for visualization with BrainNet Viewer
Permutation test for group difference of graph measures
Create connection matrices for tractography analysis
Initialize variables for further use in brainGraph
Calculate vertex participation coefficient
Create a data table with graph global measures
Simulate a random graph with given degree sequence and clustering.
Coordinates for data from the Desikan-Killiany-Tourville atlas
Coordinates for data from the AAl90 atlas
Do between-group tests at each vertex for a given graph measure
Calculate the rich club of a graph
Calculate a vertex's leverage centrality
Create a data table with graph vertex measures