plot_brainGraph

A logical, whether to rescale the coordinates

rescale

A vector giving limits for the vertical axis

ylim

main

Other parameters (passed to <code><a href="/link/plot?package=brainGraph&version=0.48.0" rd-options="" data-mini-rdoc="brainGraph::plot">plot</a></code>).

This function plots a graph when the spatial layout of the nodes is important
(e.g. in the brain). It is really just a wrapper for
<code><a href="/link/plot.igraph?package=brainGraph&version=0.48.0" rd-options="" data-mini-rdoc="brainGraph::plot.igraph">plot.igraph</a></code>, with some options pre-specified that work for
plotting in the brain's layout. This means that
<code><a href="/link/set.brainGraph.attributes?package=brainGraph&version=0.48.0" rd-options="" data-mini-rdoc="brainGraph::set.brainGraph.attributes">set.brainGraph.attributes</a></code> needs to be run on the graph,
and a valid set of coordinates provided for the vertices. Most of the
parameters valid here can be seen in <code><a href="/link/igraph.plotting?package=brainGraph&version=0.48.0" rd-options="" data-mini-rdoc="brainGraph::igraph.plotting">igraph.plotting</a></code>.

A set of tools for performing graph theory analysis of brain MRI
    data. It is best suited to data from a Freesurfer analysis (cortical
    thickness, volumes, local gyrification index, surface area), but also works
    with e.g., tractography data from FSL. It contains a graphical user
    interface for graph visualization and data exploration.

plot_brainGraph: Plot a graph with a specific spatial layout

Description

Usage

Arguments