metabFigurePlot

Produce a single <code><a href="/link/gTree?package=bubbleHeatmap&version=0.1.1" data-mini-rdoc="bubbleHeatmap::gTree">gTree</a></code> object representing plots arranged
according to the provided Nightingale metabolomics figure template.

Plotting package based on the grid system, combining elements of
a bubble plot and heatmap to conveniently display two numerical variables,
(represented by color and size) grouped by categorical variables on the x
and y axes. This is a useful alternative to a forest plot when the data can
be grouped in two dimensions, such as predictors x outcomes. It has
particular advantages for visualising the metabolic measures produced by
the 'Nightingale Health' metabolomics platform, and templates are included
for automatically generating figures from these datasets.

Ruth Boxall

bubbleHeatmap

Produces 'bubbleHeatmap' Plots for Visualising Metabolomics Data

Michael Holmes

Robin Walters

metabFigurePlot function

<dl><dt>treeList</dt>
<dd>List of bubbleHeatmap trees. This function expects a treeList
of particular length, containing trees with specified names and dimensions.
The easiest way to generate this is via the <code>formatData</code>,
<code>multiPlotInput</code> and <code>bubbleHeatmapList</code> functions.
See vignette for full details of this workflow.</dd></dl>

Arguments

Produce a single <code><a href='https://rdrr.io/r/grid/grid.grob.html'>gTree</a></code> object representing plots arranged
according to the provided Nightingale metabolomics figure template.

Arrange List of bubbleHeatmap Plots According to Preset Nightingale Template. — metabFigurePlot

<dl>

<dt>treeList</dt>
<dd>List of bubbleHeatmap trees. This function expects a treeList
of particular length, containing trees with specified names and dimensions.
The easiest way to generate this is via the <code>formatData</code>,
<code>multiPlotInput</code> and <code>bubbleHeatmapList</code> functions.
See vignette for full details of this workflow.</dd>

</dl>

metabFigurePlot: Arrange List of bubbleHeatmap Plots According to Preset Nightingale Template.

Description

Usage

Value

Arguments