bumblebee (version 0.1.0)
Quantify Disease Transmission Within and Between Population
Groups
Description
A simple tool to quantify the amount of transmission
of an infectious disease of interest occurring within and between
population groups. 'bumblebee' uses counts of observed directed
transmission pairs, identified phylogenetically from deep-sequence data or
from epidemiological contacts, to quantify transmission flows within and
between population groups accounting for sampling heterogeneity. Population
groups might include: geographical areas (e.g. communities, regions),
demographic groups (e.g. age, gender) or arms of a randomized clinical
trial. See the 'bumblebee' website for statistical theory, documentation
and examples .