sampling_frequency

Estimated number of individuals with HIV in intervention and control communities
of the BCPP/Ya Tsie trial, and the number of individuals sampled from each for
HIV viral phylogenetic analysis.

datasets

A simple tool to quantify the amount of transmission
of an infectious disease of interest occurring within and between
population groups. 'bumblebee' uses counts of observed directed
transmission pairs, identified phylogenetically from deep-sequence data or
from epidemiological contacts, to quantify transmission flows within and
between population groups accounting for sampling heterogeneity. Population
groups might include: geographical areas (e.g. communities, regions),
demographic groups (e.g. age, gender) or arms of a randomized clinical
trial. See the 'bumblebee' website for statistical theory, documentation
and examples <https://magosil86.github.io/bumblebee/>.

Lerato E Magosi

bumblebee

Quantify Disease Transmission Within and Between Population
Groups

Marc Lipsitch

sampling_frequency function

A data frame:<dl class="dl-horizontal">
<dt>population_group</dt><dd>Population group</dd>
<dt>number_sampled</dt><dd>Number of individuals sampled per population group</dd>
<dt>number_population</dt><dd>Estimated number of individuals in each population group</dd>
</dl>

Format

Sampling fequency — sampling_frequency

A data frame:<dl class='dl-horizontal'>
<dt>population_group</dt><dd>Population group</dd>
<dt>number_sampled</dt><dd>Number of individuals sampled per population group</dd>
<dt>number_population</dt><dd>Estimated number of individuals in each population group</dd>
</dl>

sampling_frequency: Sampling fequency

Description

Usage

Arguments

Format

References