caret v3.21

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by Max Kuhn

Classification and Regression Training

Misc functions for training and plotting classification and regression models

Functions in caret

Name Description
extractPrediction Extract predictions and class probabilities from train objects
plotClassProbs Plot Predicted Probabilities in Classification Models
normalize2Reference Quantile Normalize Columns of a Matrix Based on a Reference Distribution
format.bagEarth Format 'bagEarth' objects
findLinearCombos Determine linear combinations in a matrix
sensitivity Calculate Sensitivity, Specificity and predictive values
knn3 k-Nearest Neighbour Classification
oneSE Selecting tuning Parameters
tecator Fat, Water and Protein Content of Maat Samples
predict.knn3 Predictions from k-Nearest Neighbors
bagFDA Bagged FDA
Alternate Affy Gene Expression Summary Methods. Generate Expression Values from Probes
createDataPartition Data Splitting functions
bagEarth Bagged Earth
featurePlot Wrapper for Lattice Plotting of Predictor Variables
findCorrelation Determine highly correlated variables
plot.varImp.train Plotting variable importance measures
resampleSummary Summary of resampled performance estimates
filterVarImp Calculation of filter-based variable importance
postResample Calculates performance across resamples
trainControl Control parameters for train
aucRoc Compute the area under an ROC curve
confusionMatrix Create a confusion matrix
panel.needle Needle Plot Lattice Panel
nearZeroVar Identification of near zero variance predictors
varImp Calculation of variable importance for regression and classification models
normalize.AffyBatch.normalize2Reference Quantile Normalization to a Reference Distribution
predict.bagEarth Predicted values based on bagged Earth and FDA models
dotPlot Create a dotplot of variable importance values
maxDissim Maximum Dissimilarity Sampling
pottery Pottery from Pre-Classical Sites in Italy
plotObsVsPred Plot Observed versus Predicted Results in Regression and Classification Models
spatialSign Compute the multivariate spatial sign
print.train Print Method for the train Class
train Fit Predictive Models over Different Tuning Parameters
preProcess Pre-Processing of Predictors
plot.train Plot Method for the train Class
print.confusionMatrix Print method for confusionMatrix
BloodBrain Blood Brain Barrier Data
caret-internal Internal Functions
createGrid Tuning Parameter Grid
plsda Partial Least Squares Discriminant Analysis
oil Fatty acid composition of commercial oils
cox2 COX-2 Activity Data
resampleHist Plot the resampling distribution of the model statistics
summary.bagEarth Summarize a bagged earth or FDA fit
mdrr Multidrug Resistance Reversal (MDRR) Agent Data
applyProcessing Data Processing on Predictor Variables (Deprecated)
roc Compute the points for an ROC curve
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