A sample cellHTS object containing dual channel data
Generate the hit list from a scored cellHTS object
Measures of agreement between plate replicates from a cellHTS object
A sample cellHTS object - D. melanogaster genome-wide RNAi screen
Rearrange dataframe entries such that there is exactly one row
per ID.
Creates an object of class "ROC" which can be plotted as a ROC curve
Access and replace the batch information of a cellHTS object
Access and replace the assayData slot of a cellHTS object
Class that contain data that can be plotted as a ROC curve.
Configures the plates and plate result files
Per-experiment Z'-factor of a cellHTS object
Retrieve information related with the format of a RNAi experiment
B score normalization
Sigmoidal transformation of the score values stored in a cellHTS object obtaining the call values for each probe.
Wrapper to function 'write.table' used to write data to a
tab-delimited file
Access the annotation from a cellHTS object.
Convert an old S3 class cellHTS object to the new S4 class cellHTS object
Read a plate file obtain from EnVision Plate Reader
configurationAsScreenPlot
Screen plot of the plate configuration of a cellHTS object
Converts different well identifiers
cellHTS2 Package Overview
Read a set of plate results obtained from a HTanalyser plate reader
A sample S3 class cellHTS object - D. melanogaster genome-wide RNAi screen
Scores normalized replicate values given in a cellHTS object
A sample cellHTS object - D. melanogaster genome-wide RNAi screen
Retrieve the contents of the input files used to generate a given cellHTS object.
Experiment-wide quality control plot of a cellHTS object
Summarize between scored replicate values given in a cellHTS object to obtain a single value for each probe
Retrieve the state of a cellHTS object.
Perform RSA ranking on the screening results.
Annotates the reagents (probes) of a cellHTS object
Constructor for an object of class gseaModule
Plate plot with the row and column offsets estimated by the a spatial normalization method
cellHTS2 HTML report settings
Write the data from a cellHTS object to a tab-delimited file
Dataset with annotation of CG identifiers
A class for data from cell-based high-throughput assays
performed in plate format.
Per-plate dynamic range of a cellHTS object
Spatial normalization
Access plate effects stored in a cellHTS object.
Update old serialized cellHTS objects.
Build a cellHTS2 object from a data frame containing measurements
Read a collection of plate reader data files
Per-plate data transformation, normalization and variance adjustment
Create a directory with HTML pages of linked tables and plots
documenting the contents of a cellHTS experiment
Creates a template description file for an RNAi experiment
Summarization of dual-channel data