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cghMCR (version 1.30.0)

Find chromosome regions showing common gains/losses

Description

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

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Version

Version

1.30.0

License

LGPL

Maintainer

J Zhang

Last Published

February 15th, 2017

Functions in cghMCR (1.30.0)

cghMCR-class

Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
mergeMCRProbes

A function that appends probe ids to a data frame containing MCRs
cghMCR

The constructor for the cghMCR class
colnames-methods

Methods for Function colnames/rownames in Package `cghMCR'
plot.DNAcopy

A function to plot the original data along with the segments identified using segment of DNAcopy.
SGOL-class

Class "SGOL" reprents segments of gain or loss across samples