cghMCR (version 1.30.0)

mergeMCRProbes: A function that appends probe ids to a data frame containing MCRs

Description

This function takes a data frame generated by MCR and then append probe ids corresponding to each MCR as a column to the data frame.

Usage

mergeMCRProbes(mcr, rawData)

Arguments

mcr

mcr is a data frame generated by MCR that contains MCRs identified and other related data

rawData

rawData is a data frame with at least three columns. The first column should be probe ids, second the chromosome number the probes corresponding to, and the thrid the starting or ending chromosomal locations of the probes

Value

A data frame with MCRs and the corresponding probe ids and other data.

Details

The mcr data frame passed must have the first column for chromosome numbers, the 7th column for the starting positions of the MCRs, and the 8th column for the ending positions of the MCRs.

See Also

MCR

Examples

  data("segData")
  cghmcr <- cghMCR(segData, gapAllowed = 500, alteredLow = 0.20,
                   alteredHigh = 0.80, recurrence = 50)
  mcrs <- MCR(cghmcr)
  mcrs <- mergeMCRProbes(mcrs, segData[["data"]])