tidy.cbmod

Implements the chain binomial model for analysis of infectious disease data.
Contains functions for calculating probabilities of the final size of infectious
disease outbreaks using the method from D. Ludwig (1975)
<doi:10.1016/0025-5564(75)90119-4> and for outbreaks that are not
concluded, from Lindstrøm et al. (2024) <doi:10.48550/arXiv.2403.03948>. The package
also contains methods for estimation and regression analysis of
secondary attack rates.

Jonas Lindstrc3<b8>m

chainbinomial

Chain Binomial Models for Analysis of Infectious Disease Data

Jonas Christoffer Lindstrøm

tidy.cbmod function

<dl><dt>x</dt>
<dd>A <code>cbmod</code> object.</dd>
<dt>conf.int</dt>
<dd>Logical indicating whether or not to include a confidence interval in the tidied output. Defaults to FALSE.</dd>
<dt>conf.level</dt>
<dd>The confidence level to use for the confidence interval if conf.int = TRUE. Defaults to 0.95, which corresponds to a
95 percent confidence interval.</dd>
<dt>...</dt>
<dd>Unused.</dd></dl>

Arguments

Tidy a cbmod object — tidy.cbmod

<dl>

<dt>x</dt>
<dd>A <code>cbmod</code> object.</dd>


<dt>conf.int</dt>
<dd>Logical indicating whether or not to include a confidence interval in the tidied output. Defaults to FALSE.</dd>


<dt>conf.level</dt>
<dd>The confidence level to use for the confidence interval if conf.int = TRUE. Defaults to 0.95, which corresponds to a
95 percent confidence interval.</dd>


<dt>...</dt>
<dd>Unused.</dd>

</dl>

tidy.cbmod: Tidy a cbmod object

Description

Usage

Value

Arguments