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chipseq (version 1.22.0)
chipseq: A package for analyzing chipseq data
Description
Tools for helping process short read data for chipseq experiments
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Version
1.22.0
1.20.0
1.18.0
1.16.0
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Version
1.22.0
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
January 1st, 1970
Functions in chipseq (1.22.0)
Search functions
estimate.mean.fraglen
Estimate summaries of the distribution of fragment lengths in a short-read experiment. The methods are designed for ChIP-Seq experiments and may not work well in data without peaks.
subsetSummary
Compute summaries for cumulative subsets of a short-read data set.
peakCutoff
Calculate a peak cutoff
islandDepthPlot
Plot island depth distribution
laneSubsample
Subsample short read alignment locations
cstest
A test ChIP-Seq dataset
chipseqFilter
Filtering ChIP-seq reads
peakSummary-methods
Summarizing peak sets
diffPeakSummary
A function to identify and produce summary statistics for differentially expressed peaks.
coverageplot
Plot coverage on a small interval.