rgl_static_plots_Description

CIFTI files contain brain imaging data in "gray-ordinates", which
represent the gray matter as cortical surface vertices (left and right) and
subcortical voxels (cerebellum, basal ganglia, and other deep gray matter).
'ciftiTools' uses the Connectome Workbench to read CIFTI files into R and
apply common pre-processing steps (e.g. smoothing, resampling). It also
provides tools for visualizing the cortical surface with GIFTI files, and
for visualizing the subcortical volume.

Amanda Mejia

ciftiTools

Tools for Reading and Visualizing CIFTI Brain Files

Damon Pham

rgl_static_plots_Description function

If <code>save==TRUE</code>, the plot(s) is written to a .png file. (For 
 <code>view_xifti_surface</code>, if <code>length(idx) &gt; 1</code>, each <code>idx</code> will
 be written to a separate image file.) You can use 
 <code><a rd-options="knitr" href="/link/include_graphics?package=ciftiTools&version=0.1.6.0&to=knitr" data-mini-rdoc="knitr::include_graphics">include_graphics</a></code> to embed an image file in an R
 Markdown document. If <code>close_after_save==TRUE</code>, the return value of this
 function call is the name(s) of the image file(s) that were written, so it
 can be used directly to display the image.
There's an additional way to embed an image of this plot without writing a
 .png file: use <code>save==FALSE</code> and set the chunk options 
 <code>rgl=TRUE, format="png"</code>. You will probably need to tweak the image
 dimensions e.g. <code>fig.width=8, fig.height=5</code> in the chunk options, 
 because it uses the defaults from RMarkdown/Knitr instead of what makes
 sense based on the dimensions of the Open GL window.

rgl_static_plots_Description: Embedding the Static Plots

Description

Arguments

Embedding the Static Plots