sep_fnames_Param

(Optional) Where to write the separated files (override
 their default file names). This is a named list 
 where each entry's name is a file type label, and each entry's value
 is a file name indicating where to write the corresponding separated file. 
 The recognized file type labels are: "cortexL", "cortexR", 
 "ROIcortexL", "ROIcortexR", "subcortVol", and "subcortLabs". 
Entry values can be <code>NULL</code>, in which case a default file name will be 
 used: see <code><a rd-options="" href="/link/cifti_component_suffix?package=ciftiTools&version=0.1.6.0" data-mini-rdoc="ciftiTools::cifti_component_suffix">cifti_component_suffix</a></code>. Default file names
 will also be used for files that need to be separated/written but without a
 corresponding entry in <code>sep_fnames</code>. 
Entries in <code>sep_fnames</code> will be ignored if they are not needed
 based on <code>[ROI_]brainstructures</code>. For example, if
 <code>brainstructures="left"</code>, then <code>sep_fnames$cortexR</code> will be 
 ignored if specified.
The <code>write_dir</code> argument can be used to place each separated file in
 the same directory.

sep_fnames

CIFTI files contain brain imaging data in "gray-ordinates", which
represent the gray matter as cortical surface vertices (left and right) and
subcortical voxels (cerebellum, basal ganglia, and other deep gray matter).
'ciftiTools' uses the Connectome Workbench to read CIFTI files into R and
apply common pre-processing steps (e.g. smoothing, resampling). It also
provides tools for visualizing the cortical surface with GIFTI files, and
for visualizing the subcortical volume.

Amanda Mejia

ciftiTools

Tools for Reading and Visualizing CIFTI Brain Files

Damon Pham

sep_fnames_Param function

(Optional) Where to write the separated files (override
 their default file names). This is a named list 
 where each entry's name is a file type label, and each entry's value
 is a file name indicating where to write the corresponding separated file. 
 The recognized file type labels are: "cortexL", "cortexR", 
 "ROIcortexL", "ROIcortexR", "subcortVol", and "subcortLabs". 
Entry values can be <code>NULL</code>, in which case a default file name will be 
 used: see <code><a rd-options='' href='cifti_component_suffix'>cifti_component_suffix</a></code>. Default file names
 will also be used for files that need to be separated/written but without a
 corresponding entry in <code>sep_fnames</code>. 
Entries in <code>sep_fnames</code> will be ignored if they are not needed
 based on <code>[ROI_]brainstructures</code>. For example, if
 <code>brainstructures="left"</code>, then <code>sep_fnames$cortexR</code> will be 
 ignored if specified.
The <code>write_dir</code> argument can be used to place each separated file in
 the same directory.

sep_fnames_Param: sep_fnames

Description

Arguments