clValid (version 0.6-2)

print.sota: Print Function for a SOTA Object

Description

A default print method for a SOTA object.

Usage

## S3 method for class 'sota':
print(x, ...)

Arguments

x

a SOTA object as returned by the sota function

...

Additional arguments to pass to print

Value

• The print function does not return anything. It simply displays in the console window general information about the paritioning (cluster ID, Size, and Diversity Score), as well as cluster centroids (average profiles within each cluster) and the distance that has been used.

References

Herrero, J., Valencia, A, and Dopazo, J. (2005). A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics, 17, 126-136.

See Also

sota, print.sota

Examples

data(mouse)
express <- mouse[,c("M1","M2","M3","NC1","NC2","NC3")]
rownames(express) <- mouse$ID

sotaCl <- sota(as.matrix(express), 4)
names(sotaCl)
sotaCl
plot(sotaCl)
plot(sotaCl, cl=2)