clonotypeR (version 1.10.2)

unique_clonotypes: Lists unique clonotypes in libraries.

Description

Finds all the clonotypes expressed in one or more libraries, and returns a vector where they are listed once. This vector can be used to subset a clonotype_table.

Usage

unique_clonotypes(..., data)

Arguments

...

One or more character vectors contain clonotype library names

data

The name of the clonotype_table where the data is stored.

Value

Character vector of clonotype names. Their order follows the original row name order of the clonotype_table.

See Also

clonotype_table, common_clonotypes

Examples

# Load example data
clonotypes.long <- read_clonotypes(system.file('extdata', 'clonotypes.txt.gz', package = "clonotypeR"))
clonotypes <- clonotype_table(levels(clonotypes.long$lib), data=clonotypes.long)
summary(clonotypes)

# List clonotypes found in library A.
unique_clonotypes("A", data=clonotypes)

# List clonotypes found in library A or B.
unique_clonotypes("A","B", data=clonotypes)