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cnvGSA (version 1.10.0)

Gene Set Analysis of (Rare) Copy Number Variants

Description

This package is intended to facilitate gene-set association with rare CNVs in case-control studies.

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Version

Version

1.10.0

License

LGPL

Maintainer

Robert Ziman

Last Published

February 15th, 2017

Functions in cnvGSA (1.10.0)

readParamsRFile

Read cnvGSA parameters from a file (R format)
summary-methods

cnvGSA methods for function summary
getCnvGenes

Determine genes hit by CNVs
CnvGSAOutput-class

Class "CnvGSAOutput"
cnvGSA-package

Gene-Set Analysis of (Rare) Copy Number Variants
cnvGSAexportBurdenStats

Export burden statistics
cnvGSAFisher

CNV/gene-set association using Fisher Exact Test
CnvGSAInput-class

Class "CnvGSAInput"
readGVF

Read CNVs from a .gvf file
readGMT

Read gene-sets from a .gmt file