cobindR (version 1.10.0)

binding_sites: motif hits on the foreground sequences

Description

motif hits on the foreground sequences

Usage

"binding_sites"(x)
"binding_sites"(x) <- value

Arguments

x

a cobindr object

value

data.frame holding the binding site hits in the foreground sequences

Value

motif hits in foreground sequences as data.frame

See Also

uid,name,sequences,bg_sequences,desc,configuration,binding_sites,bg_binding_sites,pfm,pairs,bg_pairs,pairs_of_interest

Examples

cfg <- cobindRConfiguration()
sequence_type(cfg) <- 'fasta'
sequence_source(cfg) <- system.file('extdata/sox_oct_example_vignette_seqs.fasta',package='cobindR')
sequence_origin(cfg) <- 'Mouse Embryonic Stem Cell Example ChIP-Seq Oct4 Peak binding_sites'
cbr <- cobindr(cfg)
binding_sites(cbr)